| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3397 |
|---|
| Symbol | dctP2 |
|---|
| ID | 5712455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3575429 |
|---|
| End bp | 3576475 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641269326 |
|---|
| Product | TRAP transporter - DctP subunit |
|---|
| Protein accession | YP_001534731 |
|---|
| Protein GI | 159045937 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTA AAACAATGGC AGCGGTAAGC TGCCTGAGCC TTGCCGCGTC GGGTGCATCG
GCACAAGAAG TGTTCGAAAT GACGTCGGCG TTCGGGAAGA ACCTGCCGGT GCTGGGCACC
GCGGCGGTCA ACTTCGTCGA AAAGATCAAC GGCATTTCGG AAGGCGTGGA GTTCGAGCAT
TTCGATCCAG GCGAGCTTGT GCCGGTTCTC GAAGCGCTTG ACGCCGTGTC CAGCGGTTCG
GTCGATGCTG CCTACACGAC CTCTGGTTAT TGGCAGGGCA AGATGGCCGC TGCTGGCCTC
TTCGCGGCCG TGCCGTTCGG CCCCGAGCCC GGCGAGATGC TGGCCTGGAT GCTCTACGAC
GACGGCCTGA CGTTGATGCG CGAGATGTAC GAGACCAACG GGTACAACGT GCATGTAATG
CCCTGCGGGA TCTACGCGCC CGAAACCTCC GGCTGGTTCA AGGAAGAGAT CAACTCGATC
GAGGACCTTC AGGGCCTCAA CATGCGCTTC TTTGGTCTCG GCGCCGAGGT CATGCAGAAA
CTGGGTGTGT CCACCTCGCT GTTGGCCGGC GGTGATATCT TCCCGGCGTT GGAGCGCGGC
GCAATCGACG CGACCGAATT CTCCATGCCC ATCGTGGACG CGCGGCTCGG CTTCTACAAC
ATCGCCAAGT TCAACTACTT CCCCGGCTGG CACCAGCCGT CGACCGTGTT CGAGCTTCTT
GTGAACAAGG ACCGTTGGGA AGAGCTGGAT GAGCGGTCCC AGAAACAGAT CGAGATCGCC
TGCATGGCGA ACGTCACCGA CAACTTTGCC GAAGGTGAAG CTGTGAACTT CCCTGCCATG
ATCGACAACG TCGAGAATCG CGGCGTAACC ATCAAGCAGT GGACCCCTGA ACAGTTGCGT
GCATTCGAAG CCGCATGGCT CGAAGTGGCG GCGGAACTGG CGGAAAGCGA CGAGATGTTC
GCCAAAGCCT GGGCGGATCT GCAGGAATTC CGCGAGGGCT ATGCCCTGTG GGGTAACAAC
ATCAACCTGC CGCGTCCCTG GAACTGA
|
|---|
| Protein sequence | MKIKTMAAVS CLSLAASGAS AQEVFEMTSA FGKNLPVLGT AAVNFVEKIN GISEGVEFEH
FDPGELVPVL EALDAVSSGS VDAAYTTSGY WQGKMAAAGL FAAVPFGPEP GEMLAWMLYD
DGLTLMREMY ETNGYNVHVM PCGIYAPETS GWFKEEINSI EDLQGLNMRF FGLGAEVMQK
LGVSTSLLAG GDIFPALERG AIDATEFSMP IVDARLGFYN IAKFNYFPGW HQPSTVFELL
VNKDRWEELD ERSQKQIEIA CMANVTDNFA EGEAVNFPAM IDNVENRGVT IKQWTPEQLR
AFEAAWLEVA AELAESDEMF AKAWADLQEF REGYALWGNN INLPRPWN
|
|---|
| |