| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3383 |
|---|
| Symbol | |
|---|
| ID | 5712441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3559437 |
|---|
| End bp | 3560141 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641269312 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001534717 |
|---|
| Protein GI | 159045923 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 44 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATC TCAATCCGAT TTCCCGCGCT CCGGGCCCTG AAGATAACGC CAACTGCCCC
GCGCAGGTCT CGATGATCGC GCCGCTTGTC ATCATCGGCT TCTGCATTCT CGTCGAAGGT
ATCCTGCAGC TGGCCAATCT CGGCATGATC GATCATCCAC GCCTCCGCGC GGAAGTGGTG
GAATACCTTG GGTTCTGGCC CGGGCTTTTG GGCACGTGGC GCCCAAACTA CGCAGGGCAG
CCATATGCCA TGTTCTTTAC CTACGGGTTT CTGCATGGCG GGCTGCTGCA TCTCGTGCTG
AACATGGTGA CGCTCTATTC GCTTTCGCGG GCAGTGATCG ATCGTGTCGG TAGCGGCAAG
TACCTGCTGC TTTACGCGGC AACGATCATA GGAGGGGCGA TCGGCTACTG GCTGCTGACC
TCGAGTCTCC GACCCATGGT GGGAGCGTCT GGCGCCTTGT TCGGGCTCGC AGGGGCCATT
GTGGCGTGGG ACTATCTCGA CCGCTTCCTG TTGTCAGAAG GGCTATGGCC GGTCCTTCGA
ACGGTTCTTT TCCTGGTCGG GCTGAACATT GCGCTCTGGT GGGCAATGGG GGGGCAGTTG
GCCTGGGAAA CCCACCTTGG GGGCTTTGTC ACGGGTTGGG TGATGGCCAT GCTGCTCGAT
CCTCGGGGAC GCCCCATGGA CGACCCGCCG CCTACAGATC AGTAA
|
|---|
| Protein sequence | MKDLNPISRA PGPEDNANCP AQVSMIAPLV IIGFCILVEG ILQLANLGMI DHPRLRAEVV
EYLGFWPGLL GTWRPNYAGQ PYAMFFTYGF LHGGLLHLVL NMVTLYSLSR AVIDRVGSGK
YLLLYAATII GGAIGYWLLT SSLRPMVGAS GALFGLAGAI VAWDYLDRFL LSEGLWPVLR
TVLFLVGLNI ALWWAMGGQL AWETHLGGFV TGWVMAMLLD PRGRPMDDPP PTDQ
|
|---|
| |