| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3172 |
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| Symbol | nirN |
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| ID | 5712228 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3334742 |
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| End bp | 3336295 |
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| Gene Length | 1554 bp |
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| Protein Length | 517 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641269099 |
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| Product | nitrite reductase protein N |
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| Protein accession | YP_001534506 |
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| Protein GI | 159045712 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2010] Cytochrome c, mono- and diheme variants |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 0.854794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCCAA GCCGGCTTTT GTCTAGCCTC GCGGTTCTGG TCGCCCTGAC CACGCCGGCG
CTGGCCGATC CTGCGCAAAT CTACGCCGAG GAGTGCGCCA TGTGCCATGG CGGCGACCGT
CTTGGCGGCA CCGGCCCCGC GCTGATCCCC GAAACCCTCA GCCGCATGCG CGGCCCGCAC
CTGCACGATG TGATCGCCCA TGGCCGTGCC GCGACGCAGA TGCCAGGTTT CGAGGATGTG
ATCTCCGAGA CCGAGATCGC CGCACTTGCG GAATGGCTCA ACACCCCGCT GAACGAGATC
CCCGCCTGGG GTCCCGAGCA GATCGCGGCC AGCGCGACCA TGAACGCGGG CTATGTCGCG
GCACCGGCCC CGGTCTGGGA CGCGGACCCG ATGAACATCA CGCTGGTCGT GGAGACCGGC
GATCACCATG TCAGCGTGCT CGACGGCGAC AGCTGGGACG TGCTCGACCG ATTCGAAACC
CCCTTTGCCG TCCATGGCGG CCCGAAATTC ACGCCGGACG GGCATTTCGT CTTCGTCATG
TCCCGCGATG GCTGGGTCCA GAAATACGAC CTGTGGTCCC TGCAGGAGGT CGGGCGCGTG
CGCGCGGGCC TCAACAGCCG CAACATCGCC ATGAGCCATG ACGGCAAGTG GCTTGCGGTG
GCCAATTACC TGCCCCAGAC CCTGACCATC CTGTCGACCG AAGATCTCTC CGTGGCGCGG
GTGATGGACG TGATCTCGAA ATCCGGGCAG ACCAGCCGGG TCTCTGCGGT CTACCAGGCA
CCCCAGCGGC AGAGCTTCAT CCTCGCACTC AAGGACGCTC CCGAAATCTG GGAAGTGGCC
ACGGACCCGG AAGCCGACCC GGTCTACGAA GGCTTCGTGC ACAGCCGCGA GAAGGACATG
GTCGAGGCGA TCGCCTCCTC TGAGGGGCTC TTCGCTCGCC GCCGGATCGA GACCGCCGAG
CCGATCGACG ATTTCTTCTT CACCCCGGAT TACCGCTTCC TGATCGGGGC GGCGCGCGAC
GGGGCGCACG GGGTGGTCGT GAACCTCAAT GTCGGGCGCG AGATCGCCAA GCTGCCCCTT
CCGGGCATGC CGCATCTCGG CTCCGGCATC TCCTGGATCC GGGGCGACAC CCGCGTCATG
GCCACGCCGC ACCTGCGCGA GGGCAAGCTG TCTGTGATCG ACATCGAAAG CTGGGAGGTC
CTGAGCACGA TCGAAACCGA AGGCCCGGGT TTCTTCCTGC GCAGCCATGA GAACACGCCC
TATGTCTGGG CCGACGTGTT CTTCGGTCCG AACAAGGACG TGATGCACGT GATCGACAAG
CAGAGCCTGG AGATCGTCAA GACCCTGCGC CCGGAACCCG GCGCCACGGT TGCCCATGTG
GAGTTCGACC GCGACGGAAC CCATGCGCTT GTCAGCATCT GGGAAGAAGA CGGCGCGGTG
ATCGTCTATG ATGCGGCCAC GCTCGAAGAG GTCAAGCGCC TGCCCATGAA CAAACCATCG
GGGAAATACA ATGTCTGGAA CAAGATCACC TTCTCCGAAG GCACGAGCCA CTGA
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| Protein sequence | MTPSRLLSSL AVLVALTTPA LADPAQIYAE ECAMCHGGDR LGGTGPALIP ETLSRMRGPH
LHDVIAHGRA ATQMPGFEDV ISETEIAALA EWLNTPLNEI PAWGPEQIAA SATMNAGYVA
APAPVWDADP MNITLVVETG DHHVSVLDGD SWDVLDRFET PFAVHGGPKF TPDGHFVFVM
SRDGWVQKYD LWSLQEVGRV RAGLNSRNIA MSHDGKWLAV ANYLPQTLTI LSTEDLSVAR
VMDVISKSGQ TSRVSAVYQA PQRQSFILAL KDAPEIWEVA TDPEADPVYE GFVHSREKDM
VEAIASSEGL FARRRIETAE PIDDFFFTPD YRFLIGAARD GAHGVVVNLN VGREIAKLPL
PGMPHLGSGI SWIRGDTRVM ATPHLREGKL SVIDIESWEV LSTIETEGPG FFLRSHENTP
YVWADVFFGP NKDVMHVIDK QSLEIVKTLR PEPGATVAHV EFDRDGTHAL VSIWEEDGAV
IVYDAATLEE VKRLPMNKPS GKYNVWNKIT FSEGTSH
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