| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3080 |
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| Symbol | |
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| ID | 5710932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 3247400 |
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| End bp | 3248863 |
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| Gene Length | 1464 bp |
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| Protein Length | 487 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641269007 |
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| Product | efflux transporter |
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| Protein accession | YP_001534414 |
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| Protein GI | 159045620 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGATTCC TGACCCGCAG CCTTGTGGGC CTTGTGCTTC TGTCCCTGAC ATTGGGGCTT
CTGGGGCTGG GCGGGCTGAT CCTGTCCGAT GCGATCACCG CGCGCAATGC CGATGCCCCG
GCGAGCAGCA CGGCCCGCGA GCGGGTCTAT GCCGCAAGCG TGATGACCCT GGAGCCGGAG
GTCGTCACCC CGGTCCTGAC TGTTTTCGGA GAAATCCGCA GCCGCCGCAC CTTGGAGCTG
CGCGCCTCCA GCGCCGGCGT GATCACCGCC CTGCACCCCT CGTTCGAAGA GGGCGGGCGC
GTGGCGGCGG GCGAGGTTCT GGCCCAGATC GACCCGGCGG ATGCGGAAAC CGCCTTGCAG
AAGGCGCGCA ACGACCTGGC CGAGGCGCGC GCGACGCTGG CGGATGCGGA ACGCTCTTTG
GTGCTGGCGA CCGATGACGT CGCCGCGGCA CAGGCGCAGC TGGACCTGCA GCGGCGGGCG
CTGGCGCGGC AACGCGACCT TCTGGCCCGC GGCGTCGGGA CCGAAGCCAA TGTGGAGGGG
GCCGAACTGG CCGAGGCCGC CGCCCTGCAA TCACTGCTGT CGCGCCGCAC GGCACTGGCC
GCGGTGGAGG CCCGGATCGA CCAGGCCCGG ACCCAGATCG CCCGGCGCGA GATCGAGGTG
GCCGAGGCCG CCCGCGACCT GGAGGATACC ACCCTGACGG CGGCCTTCGA CGGCACGCTC
AGCGGCACTG CCGCCGTGAT CGGCGGGCGC GTGGCGGCGA ACGAGAAACT GGCCGATCTG
ATCGACCCCA CGGCGCTGGA AGTGGCCTTC CGCACCTCCG CCACCCAGTA CCTGCGCCTG
TTGGACGACA GCGGGCGGTT GCGGGACACC GAGGTGGAGG TCACGCTCGA GGTGCTGGGG
GAGGCGATCC GCGCCACGGC GCAGCTCAAC CGCGCCGCGG CACGGGTCGG CGAGGGGCAG
ACCGGCCGGC TGCTCTTCGC CCGTCTGGAC GACGCGCCCG CCTTCCGCCC CGGCGATTTC
GTGACCGTCA CCGCCCCGGA GCCGCCGGTG GAGGACGCGG TGGTGCTGCC CGCGACCGCC
GTGGCCCCCG ATGGCAGCGT TTTGCTGCTG GGCGCGGAGG ACCGGCTGGA GGTCGGCCGG
GTGGAGATCC TGCGCCGTCA GGGCGACGAG ATGATCGTGC GCGTCGGCGG CCATGCGGGC
CGCGAAGTGG TGACCGAGCG CGCGCCGGTC CTGGGCGCTG GGATCAAGGT CCGTCCGATC
CGGGCCACGC CGGAGGGGGC GGTGACCGCC GCCAGTACCG AGATGCTCAC CCTCGACCCG
GACCGCCGCG CGCGCCTGAT CGCCTTCGTG GAGGGCAATG ACCGGATGCC CGCAGAGGCC
AAGGCCCGGC TGGTGGCGCA ACTGGCCGAG GACCAGGTGC CGGCCGCCGT GGTCGCGCGG
CTTGAGAGCC GGATGGGCAG CTGA
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| Protein sequence | MRFLTRSLVG LVLLSLTLGL LGLGGLILSD AITARNADAP ASSTARERVY AASVMTLEPE
VVTPVLTVFG EIRSRRTLEL RASSAGVITA LHPSFEEGGR VAAGEVLAQI DPADAETALQ
KARNDLAEAR ATLADAERSL VLATDDVAAA QAQLDLQRRA LARQRDLLAR GVGTEANVEG
AELAEAAALQ SLLSRRTALA AVEARIDQAR TQIARREIEV AEAARDLEDT TLTAAFDGTL
SGTAAVIGGR VAANEKLADL IDPTALEVAF RTSATQYLRL LDDSGRLRDT EVEVTLEVLG
EAIRATAQLN RAAARVGEGQ TGRLLFARLD DAPAFRPGDF VTVTAPEPPV EDAVVLPATA
VAPDGSVLLL GAEDRLEVGR VEILRRQGDE MIVRVGGHAG REVVTERAPV LGAGIKVRPI
RATPEGAVTA ASTEMLTLDP DRRARLIAFV EGNDRMPAEA KARLVAQLAE DQVPAAVVAR
LESRMGS
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