| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3068 |
|---|
| Symbol | |
|---|
| ID | 5710920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3236804 |
|---|
| End bp | 3237751 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641268995 |
|---|
| Product | DNA-binding transcriptional activator GcvA |
|---|
| Protein accession | YP_001534402 |
|---|
| Protein GI | 159045608 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGATC GCCTCCCCCC GCTGACCGCC CTGCGCGCCT TCGACGCCGC CGCGCGGCAC
ATGAGTTTCG CCAAGGCGGC GGCGGAGTTG AACGTCACGC CTGCCGCCCT GAGTTTTCAG
ATCAAGGGGC TGGAGGAGCA TCTGGGCGCG CCGCTCTTTC GGCGGCTGAA CCGGGCGGTG
GAATTGACCG AGGCGGGCAA GGCGCTGGCC CCCGGGGCCG CGGAAGGGTT CGACGCGCTG
CGGCGGGCCT GGATGGCGAC GCGGCGGAGC CTGGACGCAA GGACGCTGAC AGTGACGGCG
GGGCCTGCGT TCACGGCGAA GTGGCTGGCG CCACGGCTGT TCGATTTCGC CCAGAAGCAC
CCGGATATCG AGCTGCGGTT TTCCGCCAGC CTGCGACTGG TGGATTTCGA CCGGGACGAC
GTGGATCTCG CGATCCGATT CGGGATGGGC GGTGACGACG CGGGGGTCTA CAGCCGGGTG
TTGGTGCGCG AGTGGTTGGC ACCGATGGTG GCGCCGCATC TGGCGGAGCG GCTGCGCGTT
CCTGCGGACT TGCTGAAGCT GCGGCTTCTG GATGACGGCA ACCTGGATTT CGTGCGCCCG
CCCTGCGACT GGGCCGCGTG GTTCCGTGCC ATGGGCGTTG CCGATCCGCC GGAGGTGACG
CCGCAATTCA GCCAGGCCGA CCATGCGATC GATGCGGCCG AGACCGGGGG CGGGGCGATC
CTGGGCCGGA TATCATTGAC GACCAAGGCG CTGCAGGACG GGCGGCTGGT GATCCCGTTT
CCCACGGCCC TGACCACCAG GGCCCATTAC CGGGTGCTCT GCCCGGCGGG CGCGGAGCAA
AAGCCCCAGG TTCAGGCGTT CCTGTCCTGG CTGTTCGATA ACGTGGGGGA GTTTGCGGCC
CATGACCGGC AGATGAGCTT CATCGACGCG GGCGACGTGG GCACCTGA
|
|---|
| Protein sequence | MHDRLPPLTA LRAFDAAARH MSFAKAAAEL NVTPAALSFQ IKGLEEHLGA PLFRRLNRAV
ELTEAGKALA PGAAEGFDAL RRAWMATRRS LDARTLTVTA GPAFTAKWLA PRLFDFAQKH
PDIELRFSAS LRLVDFDRDD VDLAIRFGMG GDDAGVYSRV LVREWLAPMV APHLAERLRV
PADLLKLRLL DDGNLDFVRP PCDWAAWFRA MGVADPPEVT PQFSQADHAI DAAETGGGAI
LGRISLTTKA LQDGRLVIPF PTALTTRAHY RVLCPAGAEQ KPQVQAFLSW LFDNVGEFAA
HDRQMSFIDA GDVGT
|
|---|
| |