| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3009 |
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| Symbol | |
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| ID | 5710861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 3177623 |
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| End bp | 3178567 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641268936 |
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| Product | ABC transporter related |
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| Protein accession | YP_001534343 |
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| Protein GI | 159045549 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.450322 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGTGA CACCCGACCC GCAGGCCCCG AACCAGCAAA CGGCCGAGGC CAATCTCGAC
CCGGTCTCCC GCTTCAATCG CTTCGATAAT CCGTGGCTGA ACCCGAGACT CCTCTGGGGG
TCGGGCATCC TGCTGGTGAT CATCCTCGGT GGGATCATCG GGCGGATGCT CTGGGACACG
GACCTCGTTT TCACAGGCTC TACGCCCCTG AAGCTGCCCC CCCTGGGGTT CGAGAACCTG
CGCCGTCAGG AAGGCATCGC CGATTACCCG CTGGGCACCG ACGGGGCCGG GCGCGACATG
CTGGCGATGC TGATCATCGG CACGCCCAAC ACGCTGATGA TCGGGGCGAT CGCATCGGTG
ATCGGGATGA GCCTGGGGAT CTTCCTGGGC TTTACCGCAG GCTTCGTCGG CGGCCGCGTG
GACGACACGA TCCGCGTGCT GTCGGACGTG ATGATCACCA TCCCGCCGCT CCTGATACTC
GTGGTGTTCC AGGCGTCCTT CGGCGATGTG AGCCTGGTGA TGATGGCCTT CCTGATCGCG
GGGTTCATGT GGCAATCGCC CACGCGCCTC ATACGGGCGC AGGTGCTGTC CATGAAACGC
TCGGGCTACG TGCAGATGGC GCAGCTCAGC GGCGCCTCGA CCTTCCACAT CATGTTCCGC
GAGATGCTGC CGAACCTGAT CCCGTACCTG TTCGGCTCGT TCATCGCCAA CGTCACCACC
GCCATTGTCA CCGCCGTGGG GCTCGAAGTG CTCGGCCTCG GCCCGCAGCG GATCCCGACG
CTCGGCCGGG TGATCTACGA CGCGATCAAC TCCGGGGCGC TGATCCAGAA CCTGTGGTGG
TGGTGGGGCC TGCCCACGGC CCTGCTGGCG ACCATGTTCA TCGCGCTCCT GCTGATCAAT
CTCGGCCTCG ACGAGGTCTC CAACCCGCGC CTGCGCAAGA TCTGA
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| Protein sequence | MTVTPDPQAP NQQTAEANLD PVSRFNRFDN PWLNPRLLWG SGILLVIILG GIIGRMLWDT
DLVFTGSTPL KLPPLGFENL RRQEGIADYP LGTDGAGRDM LAMLIIGTPN TLMIGAIASV
IGMSLGIFLG FTAGFVGGRV DDTIRVLSDV MITIPPLLIL VVFQASFGDV SLVMMAFLIA
GFMWQSPTRL IRAQVLSMKR SGYVQMAQLS GASTFHIMFR EMLPNLIPYL FGSFIANVTT
AIVTAVGLEV LGLGPQRIPT LGRVIYDAIN SGALIQNLWW WWGLPTALLA TMFIALLLIN
LGLDEVSNPR LRKI
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