| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2858 |
|---|
| Symbol | deoD |
|---|
| ID | 5710709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 3016895 |
|---|
| End bp | 3017599 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641268784 |
|---|
| Product | purine nucleoside phosphorylase |
|---|
| Protein accession | YP_001534192 |
|---|
| Protein GI | 159045398 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0813] Purine-nucleoside phosphorylase |
|---|
| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC ATATCGGCGC CGCCCCCGGC GACATCGCGG AAACCGTGCT GATGCCGGGC
GACCCCCTGC GCGCGAAATG GGCCGCGGAG ACGTTCCTGG ACGACCCGGT CTGCGTCAAC
GAGGTGCGCG GCATGCTCGG CTTCACCGGC ACCTGGTGCG GGCACCGGGT GACGATCCAC
GGCTCCGGCA TGGGCATGCC CAGCCTGTCG ATCTACGCCA ACGAGCTGAT TACAGAGTAC
GGCGCGCAGA CCCTGATCCG CATCGGATCC ACCGGCGCGA TGCAGAACCA CGTGGCCCTG
CGCGACGTGA TCCTGGCGAT GACCTGTTCG TCGATTTCGA CCCCGTCCTC GGGCATCTTC
TGCGAGCTGA ACTTCGCCCC CTGCGCCGAT TGGGGCCTGC TCAAGGCCGC CGAGGCCGCG
GCGGGGGCGA AGGGGACGAA AACCCATGTG GGCGGGATCT ATTCCTCGGA CGTGTTCTAC
GACGAACGCC CTGATCTGAC GGAACAAATG ATCCGCCACG GGGTGCTGGG CGTCGAGATG
GAGGCAGCCG AGCTCTACAC CCTCGCCGCC CGCCACGGCC GCCGGGCGCT GGCGGTGCTG
ACGGTCTCGG ACCACCTGCT GACCCACGAC GCGCTACCGT CGGCGGAGCG GCAATCGAGC
TTCGGCGACA TGGTGGAGAT CGCGCTGGAG GCGGCCTTCG CATGA
|
|---|
| Protein sequence | MTIHIGAAPG DIAETVLMPG DPLRAKWAAE TFLDDPVCVN EVRGMLGFTG TWCGHRVTIH
GSGMGMPSLS IYANELITEY GAQTLIRIGS TGAMQNHVAL RDVILAMTCS SISTPSSGIF
CELNFAPCAD WGLLKAAEAA AGAKGTKTHV GGIYSSDVFY DERPDLTEQM IRHGVLGVEM
EAAELYTLAA RHGRRALAVL TVSDHLLTHD ALPSAERQSS FGDMVEIALE AAFA
|
|---|
| |