| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2609 |
|---|
| Symbol | rpoH2 |
|---|
| ID | 5713507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 2772541 |
|---|
| End bp | 2773437 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641268533 |
|---|
| Product | RNA polymerase factor sigma-32 |
|---|
| Protein accession | YP_001533943 |
|---|
| Protein GI | 159045149 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000766177 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCAT ATACCAATCT TCCGGCCCCC TCTCCGGAGC AGGGCCTCAA CCGGTACCTT
CAGGAAATCC GCAAGTTTCC CATGCTGGAG CCCGAAGAGG AATACATGCT GGCCAAGCGC
TGGGTGGATC ACGAGGACAC CGAGGCGGCG CACAAGATGG TCACCTCGCA CCTGCGTCTC
GCCGCGAAAA TCGCCATGGG CTACCGCGGC TACGGCCTGC CCCAGGCGGA GGTGATCTCC
GAGGCCAATG TGGGCCTGAT GCAGGCGGTC AAGCGGTTCG ATCCCGAGAA GGGGTTTCGG
CTGGCGACCT ATGCCATGTG GTGGATCCGC GCCTCGATCC AGGAGTATAT CCTGCGGTCC
TGGAGCCTGG TGAAGCTGGG CACGACCTCG GCCCAGAAGA AGCTGTTTTT CAACCTGCGC
AAGGCCAAGA ACCGCATCGG CGCGCTGGAG GAGGGCGACC TGCGCCCGGA AAACGTCGCC
CGGATCGCCA ATGACCTGAA CGTCACCGAG GACGAGGTGA TCTCGATGAA CCGGCGGATG
TCGGGCGGGG ATGCGTCGCT CAACGCGATG ATCGGCTCGG ATGGCGAGGG CGCCACCGAA
TGGCAGGACT GGCTGGAGGA CGAGGACGCC GACCAGGCCG ACGACTTCGC CGAGAAGGAC
GAGTTGATGG TGCGCCGCGA ACTCTTGGCC GAGGCCATGG GCGTGCTCAA CGACCGCGAG
AAGGACATCC TGATGAAGCG CCGGCTGGAG GACAAGCCCG CGACCCTGGA AGAGCTGTCG
GAGGTCTACG GCGTCAGCCG GGAGCGGATC CGCCAGATCG AGGTCCGCGC CTTCGAGAAG
TTGCAGAAGG CGATGCGCGA CCTGGCCAAG GAGAAGGGGT TGATGGCGAC CGCCTGA
|
|---|
| Protein sequence | MASYTNLPAP SPEQGLNRYL QEIRKFPMLE PEEEYMLAKR WVDHEDTEAA HKMVTSHLRL
AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KRFDPEKGFR LATYAMWWIR ASIQEYILRS
WSLVKLGTTS AQKKLFFNLR KAKNRIGALE EGDLRPENVA RIANDLNVTE DEVISMNRRM
SGGDASLNAM IGSDGEGATE WQDWLEDEDA DQADDFAEKD ELMVRRELLA EAMGVLNDRE
KDILMKRRLE DKPATLEELS EVYGVSRERI RQIEVRAFEK LQKAMRDLAK EKGLMATA
|
|---|
| |