| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2602 |
|---|
| Symbol | |
|---|
| ID | 5713500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2766389 |
|---|
| End bp | 2767594 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641268526 |
|---|
| Product | acyl-CoA dehydrogenase |
|---|
| Protein accession | YP_001533936 |
|---|
| Protein GI | 159045142 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.0180568 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAA AACTCGATGC CATTCTTGCC GCAGCTCACA CGCACGCCAC TGAGGTCGTA
GCGCCCAATG TAGACGCGTG GAACGCAGCA AAGGCGTGGC CGCGCGACGC ATCTGACAAA
GCAGGCGCTG CTGGCCTGAC AGGGCTTTAC GCCCCCGAAG ATTGGGGTGG ACAAGGCCTG
CCTTTGTCGG AAGGCATACA AGTTTACGAA CAACTGGGCC TTGGGGATGG CGCTTACGCT
TTTGCCCTTT CGATGCACAA CATCTGCACA TTTGCCGGTT GCGGGTACGG CACCGACGCA
TTCAAAAAGA AATGGGCGCG GGATCTGACG GCGGGTCGGA AACTTGCGAA CTTCGCATTG
ACTGAGCCAC AATCCGGCTC GGATCCGATG AAGATGTATA CACGCGCCAT GATCAACGGG
GACGGCACTT GGACGATCAG CGGATCAAAA GCTTGGGTAA GTTTGGCGAC TGAGGCCGAC
ATTTACTTTA CGGTCGTCAA GACGAGCGAC GCACCCGGCC ACAAGGACAT GGCAATGATC
GCTATTCCCG CAGATGCACC GGGGATCAGC TTTGGCCCGT TGTATGAAAC CCCATCCTAC
AACTTCTTGC CCATGTCCGA GATGTATCTC GACAACGTTG TGGTCAGCGA GGAGAACATC
ATTCTGCCGA TCGGGCAAGG TCTGCAGGGT TCGCTCATGG CGATTGACAT CGCACGGGTC
TCAATCGCGT CCGGGTGCTG TGGCTTGATG CAAGCTGCCC TCGATACAGC ACTCTCCTAT
TCCAAGAGCC GCAAGATGTT TGGGGGTAAG AACCTCGATC TCGATGGAAT CCAATGGATG
TTGGGCGAAG TCGCAACTGA CCTTGAAGCA TCCAAGCTGC TCTATCGCAG AGCCGCCGAG
GCACTTGGCA CCCCCGACGG CCCGTTGATG GCCGCACATG CAAAACGCTT TGTCCCGGAT
GCCGCTGTGA AGGCTGCCAA TACCTGCACG CAGGTGCTAG GCGGCATGGG GTTGTTGCAA
CCCTATGGCC TCGACGGTTT GTCGCGACTG GCGCAGATGC TGCGGATCGT CGATGGCACA
ACGGAAATCA GCCGTGTGGT CATTGGGCGT GCGTTGCAAA AGCGGGCTGC TGGCTTGCCT
GACCTGCCTG TCCCCAAGGG GTTTGGCGAG CGGGATGAAG AAGCCTCCTC GATCGCAGCG
CAATAA
|
|---|
| Protein sequence | MSEKLDAILA AAHTHATEVV APNVDAWNAA KAWPRDASDK AGAAGLTGLY APEDWGGQGL
PLSEGIQVYE QLGLGDGAYA FALSMHNICT FAGCGYGTDA FKKKWARDLT AGRKLANFAL
TEPQSGSDPM KMYTRAMING DGTWTISGSK AWVSLATEAD IYFTVVKTSD APGHKDMAMI
AIPADAPGIS FGPLYETPSY NFLPMSEMYL DNVVVSEENI ILPIGQGLQG SLMAIDIARV
SIASGCCGLM QAALDTALSY SKSRKMFGGK NLDLDGIQWM LGEVATDLEA SKLLYRRAAE
ALGTPDGPLM AAHAKRFVPD AAVKAANTCT QVLGGMGLLQ PYGLDGLSRL AQMLRIVDGT
TEISRVVIGR ALQKRAAGLP DLPVPKGFGE RDEEASSIAA Q
|
|---|
| |