| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2502 |
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| Symbol | |
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| ID | 5713399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2659944 |
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| End bp | 2661263 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268425 |
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| Product | secretion protein |
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| Protein accession | YP_001533836 |
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| Protein GI | 159045042 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.867679 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGCGC GAGATTGGCA GCTGGAGGAG TTCGCCATCG GCGCGGAAGC GTCACGCATG
GCCCGGCCCC GGCGCGGGCT GACCGCGATC CTCTTGCTGA TCATGGCGCT GGCGGGGGTC
GGGCTGGTCT GGGCCGGTTG GGCCACGATC GAAGAGGTTT CGCGCGCCGA CGGACGGGTG
GTGCCCTCGG GCAGCGCGCG GGGGGTCGAG ACCCTGGAAG GCGGGATCGT CGCCGAAATC
CTCGTGGCCG AGGGCGACCG GGTGGATGCA GGGCAGGAAC TGGTGCGGAT CGACGACACC
GGCGCATCGG CCGATCTGGG CGAGCTTGCT GCCCGGCGCG CCGCCTTGCG CGCCCGCGCC
CTGCGCCTGG AGGCCGAGTT GGGCGATGCG GCGGCGGTGG ATTTCGCACC AGCGGGATTG
GCGGCGGATG ACCCCCTGGC GCTGCGCGAG CGGGCGCTTT TCGACAGTCG GCGGGCGTCC
TATGTCAGCC AACGCGCGGT ACTGGAGGCG CAGGTTCTGC AGCGCCGACA GGAGATTACC
GAACTGACCA ACGGGCTGGC GCGCAGCGAC GAAAGCCTTG CGCTGCTCGA CGAAGAGATC
GCGATCCGCG AGAATTCGGG CGTCATTCCG CGGGCGCAGA TCATTCCGGT CGAGCGGGAG
CGGACCGGCA TGCGGTCCGA GCGTGACCGT CTGGACAGCC GTCGCGCCCA GGCAGAGGCC
GCCTTGATGG AGGCGGAGGC ACGACTTACG GAGCTGGACC TGCTGCGCCG GGCCGAGATC
AACGCGGAGC GGAGCCAGAC GCTGAACGAT CTGGCGATCA TCCTCGAATC GATCCGCCGG
GCGGAAGACG TGGTGACCCG CGCGGCCCTG CGCGCGCCGG TGACCGGGGT CGTCTCGGCG
CTGAATGTCA GCAGTCAGGG CGAGGTCGTC ACGCCCGGCG AGGAAGTGTT GCGGATCGTG
CCCGAAGGCA CCGGACTGGA GATCGAGGCG CGGTTGCGGC CCGAGGACAT TGCCTTCGTG
CGCCCGGGCC TGCCGGCCAA GGTCAAGATC ACCGCCTTCG ATTTCACCAT CTACGGTGCC
CTGCCGGGCC ATGTGGTGCG CGTGGGTGCC GATGCCGAAC AGGACGACAG CACCGGCGAG
ACCTTCTTTC CGATCATCAT CCAGACCGAA GAGACCCAGC TGACCCGCGG TCAGGAGGTG
CTGGAAATCC GGCCCGGCAT GGTCGCCAGC GTCGATATCC TGACCGGGGA GCGCACGGTG
CTCGACTACT TGCTCAAGCC ATTCCGCAAG GCCCGGGCGG AGGCCTTGCG CGAGCGCTGA
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| Protein sequence | MNARDWQLEE FAIGAEASRM ARPRRGLTAI LLLIMALAGV GLVWAGWATI EEVSRADGRV
VPSGSARGVE TLEGGIVAEI LVAEGDRVDA GQELVRIDDT GASADLGELA ARRAALRARA
LRLEAELGDA AAVDFAPAGL AADDPLALRE RALFDSRRAS YVSQRAVLEA QVLQRRQEIT
ELTNGLARSD ESLALLDEEI AIRENSGVIP RAQIIPVERE RTGMRSERDR LDSRRAQAEA
ALMEAEARLT ELDLLRRAEI NAERSQTLND LAIILESIRR AEDVVTRAAL RAPVTGVVSA
LNVSSQGEVV TPGEEVLRIV PEGTGLEIEA RLRPEDIAFV RPGLPAKVKI TAFDFTIYGA
LPGHVVRVGA DAEQDDSTGE TFFPIIIQTE ETQLTRGQEV LEIRPGMVAS VDILTGERTV
LDYLLKPFRK ARAEALRER
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