| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2415 |
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| Symbol | lpxC |
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| ID | 5714071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2553954 |
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| End bp | 2554874 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641268338 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_001533750 |
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| Protein GI | 159044956 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0000287838 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.386204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGCAGAAAA CGCTCAAATC CAAGGTCGTC TTCGAAGGCG TAGGGCTCCA TAGCGGCGCA
CCCGTACGCA TGGTCGTACA CCCGGCCTCG GCAGAATACG GGATCTGGTT CAAGCGCACC
GATGTGCTGG CGGGCGACAA TTTCGTCGCC GCGCGCTGGG ACCAGGTAGA CCGCACACCG
CTCTGCACCA AGCTGCGCAA CGACGCGGGC ATGACCGTCT CCACCGTGGA GCATGTGATG
GCCGCCCTGT CGGGCTGCGG CATCTACAAT GCGCTGATCG AGTTGAACGG CCCCGAAGTA
CCGATCCTCG ACGGCAGCTC CGCCGAGTTT GTCGCAGGCT TCCTCGCCGC GGGCATCCGC
GATCTGTCCG AGCCGAGCCG CCTGCTGCGC ATCCTCAAAC CGGTCGAGGT CCGCGATGGC
CTTGCCATGG CCCGGCTCGA CCCGGCGCCC GGTTTCGAGC TGCGCTTTCA CATCGATTTC
GTCGACAGCG CCATCGGCGA CCAGTCCAAG CGCCTGTCCA TGGCCAACGG CACCTTCGTG
CGGGAGCTGT GCGACAGCCG CACCTTCTGC CGCCAGTCGG ACGTGGACGC GATGCATGCC
CAGGGCCTCG CCCTCGGCGG CACCTATGAC AACGCGGTCG TGGTCGACGG CGCGCGCGTG
CTCAGCCCCG GCGGCTTCCG CCACCCGGAC GAGGCGGTCC GCCACAAGAT GCTCGACGCG
GTGGGCGACC TGGCGTTGGC CGGCGCGCCG ATCTTCGGGC GCTACACCGG CGAACGGGCC
GGCCACACCA TGACCAACAC GCTCCTGCGG GCGCTTTTCG CGGACCCGAG CAGCTATGTG
GTCGAGACCT GCAGCCGCGC CATGGCCGCG CGCCTGCCGG GCTCGGGCCT GCATCGCACG
GACCTGCGCC TGGTGGCCTG A
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| Protein sequence | MQKTLKSKVV FEGVGLHSGA PVRMVVHPAS AEYGIWFKRT DVLAGDNFVA ARWDQVDRTP
LCTKLRNDAG MTVSTVEHVM AALSGCGIYN ALIELNGPEV PILDGSSAEF VAGFLAAGIR
DLSEPSRLLR ILKPVEVRDG LAMARLDPAP GFELRFHIDF VDSAIGDQSK RLSMANGTFV
RELCDSRTFC RQSDVDAMHA QGLALGGTYD NAVVVDGARV LSPGGFRHPD EAVRHKMLDA
VGDLALAGAP IFGRYTGERA GHTMTNTLLR ALFADPSSYV VETCSRAMAA RLPGSGLHRT
DLRLVA
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