| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2256 |
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| Symbol | ribD |
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| ID | 5713909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2378215 |
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| End bp | 2379312 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641268178 |
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| Product | riboflavin biosynthesis protein |
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| Protein accession | YP_001533593 |
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| Protein GI | 159044799 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.567476 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG ACCTGCGCTG GATGCAGGTT GCGCTGACCT TGGGGCGGCG CGGTCTCGGC
CAGTCTTGGC CGAACCCGGC GGTCGGCTGT GTGCTGGTTG CGCCGAACGG ACGCGTGGTC
GGGCGCGGTC GCACCCAGTC CGGCGGGCGC CCCCATGCGG AGGTCGTGGC CCTCGCGCAG
GCCGGGGCGG CAGCGCGCGG TGCGACGGCC TATGTGACCC TCGAACCCTG TGCCCACCAC
GGACAGACCG GCCCGTGCTG CGATGCGCTG ATCGCTGCTG GTGTGGGGCG TGTTGTCACG
GCGCTGGAAG ATCCCGATCC ACGTGTCGCA GGGCAGGGGC ATAGCCGCCT GCGCGCCGCC
GGCGTTGCCG TCACCGAAGG CGTCGGGCGT GCTGCGGCGA GGGAGGATCA GTTGGGCTTC
CTGAACCGTG TAACCCTTGG CCGTCCCATG GTGACCCTGA AACTGGCGCT GACGCTCGAC
GGCCGCATCG CAACCGCGCG AGGGGAAAGC CAATGGATCA CGGGGGCCGA GGCGCGCCGG
TACGGTCATG CCCTGCGGGC ACGGCATGAC GCCGTGCTGA TCGGGGCCGG GACTGCGCGG
ACGGATGATC CCACGTTGAC GGTTCGCGGT GTCGGCGTTG TGCGGCAACC GGTGCGGGTG
GTCGCGAGCC GGGATCTGGA CGTGCCAATT CCCTCCCGCC TCTCCCAGAG CGTGACAGCC
GACGCGCCGG TCTGGCTCTG CCACGGTGGC GAGGCGCCCG CGGAGCGGAT CGCGCGGGCG
CGTGCGGCAG GACTGAAGTG TGTGGAAGTG GCCGCAGAGG CCGAAGGCGT CTCTGTCGAA
AGTTTGCTCC GGACCCTGGC GCAGCGGGGT CTGACGCGCG TTTACTGCGA GGGCGGCGGC
GCATTTGCGG CGGGGTTGCT GCGGGCGGGC TGCGTTGACA GGCTCGCCGT TTTTTCCGCG
GGCTGCGTGA TCGGGGCGGA CGGGTTGCCG GGGCTCGGTG ATCTTGGGGT GAACCTGCTG
GCAGATGCGC CGCGCTTCAG ACGGCTCGGG GTGCGGCAAG TAGGCGGCGA TGTCCTGACC
GAATGGGCCC GTACCTAA
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| Protein sequence | MSDDLRWMQV ALTLGRRGLG QSWPNPAVGC VLVAPNGRVV GRGRTQSGGR PHAEVVALAQ
AGAAARGATA YVTLEPCAHH GQTGPCCDAL IAAGVGRVVT ALEDPDPRVA GQGHSRLRAA
GVAVTEGVGR AAAREDQLGF LNRVTLGRPM VTLKLALTLD GRIATARGES QWITGAEARR
YGHALRARHD AVLIGAGTAR TDDPTLTVRG VGVVRQPVRV VASRDLDVPI PSRLSQSVTA
DAPVWLCHGG EAPAERIARA RAAGLKCVEV AAEAEGVSVE SLLRTLAQRG LTRVYCEGGG
AFAAGLLRAG CVDRLAVFSA GCVIGADGLP GLGDLGVNLL ADAPRFRRLG VRQVGGDVLT
EWART
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