| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2234 |
|---|
| Symbol | |
|---|
| ID | 5713887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2357406 |
|---|
| End bp | 2358683 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641268156 |
|---|
| Product | putative polyhydroxyalkanoate depolymerase |
|---|
| Protein accession | YP_001533571 |
|---|
| Protein GI | 159044777 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTACC TCGTGACCTA CGATCTTATG GAAAGCGCGC GAAACACCAA TGAATGGCTG
GGGGCGACCG CGAAAGCCAT GGCATCGTAC CCGGTGACCG GCATGGTTCC GAACCCCTTT
TTCAAGGTAC TGGCAGGCTG GGGTGAGGTC ACGGAACGCA CCTTTGCGCG CATGGTCACG
AAACCCGACT GGGGCATACG CTCCGTCGTG GCCGAGGATG GGCGCGATCA CCTGGTCGAG
ACGGAAATCG TGGTTGCCCG CCCCTTCGGT GACCTGATCC GGTTCAACGT GCTCGGTCGG
CCGAAGAAAC GCCGCAAGGT TCTGCTCGTG GCGCCGATGT CCGGGCATTA CGCGACCCTG
TTGCGCTCCA CCGTGCTGAG CCTGCTGCCC GATTGCGAAG TCTACATCAC CGATTGGCAC
AACGCGCGCG ACATCCCCGT GTCTCAAGGC AAGTTCGACG TGGAGGATTA TACCCTCTAC
CTCGTGGATT TCATGAAGGT GATGGGGCCG GAGACCCATG TCATCGCGGT CTGCCAGCCC
GCGCCACTGA CATTGGCCGC GACGGCCTAT CTCGCCGCCG AAGAGCCGGA CGCCCAGCCG
CGGTCGCTGA CGCTGATCGG CGGGCCGATC GATCCGGACG CCACCCCGAC CGAGGTGACC
GATTTCGGCA ACCGCGTGAC CATGGGCCAG TTGGAGCAGA CCATGCTGCA ACGGGTCGGG
TTCAAATACG CGGGTGTGGG TCGGATGGTC TATCCCGGGC TGCTGCAACT GGCGTCCTTC
ATGTCGATGA ATGCCGAACG CCACTCCAAG GCCTTCACGG ACCAGGTTGT GCGGGCCGCC
AAGGGAGAAG CCGCCGATCA CGACGCGCAT AACCGGTTCT ACGACGAATA TCTCGCCGTA
ATGGACATGA CTGCGGAATT CTACCTTTCG ACCGTGGAGC GGATCTTCAA GAACCGCGAA
ATCGCGAAGA ATGAATTCGT GGTCAACGGC GTGCATGTGG ATATCGGCAA GATCACGACC
GTCGCGGTGA AAACCGTCGA GGGGATGGAC GACGACATCT CGGCCCCTGG CCAATGTGTC
GCCGCGTTGG ACCTCTGCAC CGGCCTGCCG CAGTCGAAAA AGGCAAGCCA CCTGGAGCCG
GGTGCGGGCC ATTACGGGAT CTTCGCGGGA CGGTCCTGGC GGAACAACAT CCGTCCTCTG
GTGCTGGAAT TCATCGACGC CAACAGCGAC GTCGCGCCCA CAGCCGCGAA CAAGAATGCC
GGGAGAGCCG CGAGCTGA
|
|---|
| Protein sequence | MKYLVTYDLM ESARNTNEWL GATAKAMASY PVTGMVPNPF FKVLAGWGEV TERTFARMVT
KPDWGIRSVV AEDGRDHLVE TEIVVARPFG DLIRFNVLGR PKKRRKVLLV APMSGHYATL
LRSTVLSLLP DCEVYITDWH NARDIPVSQG KFDVEDYTLY LVDFMKVMGP ETHVIAVCQP
APLTLAATAY LAAEEPDAQP RSLTLIGGPI DPDATPTEVT DFGNRVTMGQ LEQTMLQRVG
FKYAGVGRMV YPGLLQLASF MSMNAERHSK AFTDQVVRAA KGEAADHDAH NRFYDEYLAV
MDMTAEFYLS TVERIFKNRE IAKNEFVVNG VHVDIGKITT VAVKTVEGMD DDISAPGQCV
AALDLCTGLP QSKKASHLEP GAGHYGIFAG RSWRNNIRPL VLEFIDANSD VAPTAANKNA
GRAAS
|
|---|
| |