| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2119 |
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| Symbol | |
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| ID | 5713115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 2249037 |
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| End bp | 2250611 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641268041 |
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| Product | betaine/carnitine/choline transporter family protein |
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| Protein accession | YP_001533456 |
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| Protein GI | 159044662 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGATCC GATCAGGACC GTTCAGGGGG GTGAATCCAC ACACATCCCT GATATCGGCA
GGGATAATCC TGCTTTTCGT GTTGCTTGTG CTGGCGTTTC CAAGCCGTTC GGCCGACTGG
ATCGACGCCG CCAGAACCCT TATCACGTTC TATTTCGGCT GGTGGTACGT GCTGCTTTCG
GGCGTGTTTC TCGTATTCCT GATCGCAATC GCGTTCAGCA AATACGGCGC GATCCGGCTC
GGAGACGCGG ACGAGCGCCC GAAATACAGC TACTTTACCT GGTTCGCGAT GCTCTATGCC
GCGGGGCAGG GGATCGGGAT CATCTTCTGG TCCATCGCCG AGCCGATGTT CCACTACTCG
GGCGGCACGC CCTTCGCCGA TGGCAGCGGC ACCGCGGCTG CGGCGGACAT GGCGATGCAG
GTGACCTTCT TTCACTGGGG CCTGAACGCC TGGGCGATCT ACTGCATCGT GGCCCTGGCC
TTGTGTCTGG TCAGCTACCG GCTGAAGAAG CCGCTCGGCA TCCGCTATAC CCTCTATCCG
TTGTTCGGCG ACCGTGTCGA AGGCCCGCTG GGCGTGGTGA TCGACGTGGT GGCGGTGTTC
GCAACCATCT TCGGCATCGC GACCTCCCTT GGCCTGGGGG TCACGCAGAT CAACGCCGGC
CTCAACCACC TGTGGGGCGT TCCGATCTCC GAGACGGTCC AGCTTGTGCT GATTGCCGCG
ATCACGGCTG TGGCGCTGTG CTCGGTCCTG TCGGGCCTTG ACCGGGGCAT TAAGTGGCTG
TCGCAGGTCA ACATGTGGCT GACGATCGCC CTGCTGGTCT TCTTCTTCAC CTGGGGGCCG
ACCCAATACC TGCTGGTGAG CCTGGGCGAG GTGACGCTGG CTTACTTTGT CAGCCTCTTC
TCCTTCAACG TCTACATCGA AAGCGTGCCC GCCGAGGCAA CCCGTTGGAG CGACATGTGG
CAGGGCTGGT GGACGACCTT CTACTGGGGT TGGTGGATTT CCTGGGCGCC CTTCGTGGGG
GTGTTCGTGG CGCGCGTGTC GCGGGGCCGG ACGGTGCGGG AATTCATCCT TGGCGTCGTG
GGCGTGTCCT CGATCCTGTC CTTCGTCTGG ATCGTGGCCT ATGGCGGCAC CGCGCTCTGG
GCCGAGGTTC TGGGGCCGGG GGGCGTGTCC GATGCGGTGA GCGCGAATGT CTCCATGGCG
CTCTTTGCCA CCTTCGATGC GATGGATGTG GGGGCCATCG GCTTGGTCGC CGGCGTGTTC
GGCACGATCC TCGTGACGAC CTATTTCGTG ACCTCCTCGG ATTCCGGCAC GCTCGTTGTC
GCCACGATCC TCAGCGAGGG CAACGAGCAT CCGATGTATC GCCACCGCAT GATCTGGGGC
ACGTTCGAAG GTGTCGTCGC CGCCGTCCTG CTGGTCGTTG GCGGGAGTGC CGCGCTCAGC
ACGCTGCAGA CCGCGGCGAT CATCGCCGCA CTGCCGTTCT CGGTGATCAT GGTGCTTATG
TGTTTCGCGA TCATCCGCTG CCTTGCGCTC GAACATGGCA AAGAGGCGAT CAGATCCGCC
GACAAGACCG CCTGA
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| Protein sequence | MLIRSGPFRG VNPHTSLISA GIILLFVLLV LAFPSRSADW IDAARTLITF YFGWWYVLLS
GVFLVFLIAI AFSKYGAIRL GDADERPKYS YFTWFAMLYA AGQGIGIIFW SIAEPMFHYS
GGTPFADGSG TAAAADMAMQ VTFFHWGLNA WAIYCIVALA LCLVSYRLKK PLGIRYTLYP
LFGDRVEGPL GVVIDVVAVF ATIFGIATSL GLGVTQINAG LNHLWGVPIS ETVQLVLIAA
ITAVALCSVL SGLDRGIKWL SQVNMWLTIA LLVFFFTWGP TQYLLVSLGE VTLAYFVSLF
SFNVYIESVP AEATRWSDMW QGWWTTFYWG WWISWAPFVG VFVARVSRGR TVREFILGVV
GVSSILSFVW IVAYGGTALW AEVLGPGGVS DAVSANVSMA LFATFDAMDV GAIGLVAGVF
GTILVTTYFV TSSDSGTLVV ATILSEGNEH PMYRHRMIWG TFEGVVAAVL LVVGGSAALS
TLQTAAIIAA LPFSVIMVLM CFAIIRCLAL EHGKEAIRSA DKTA
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