| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2100 |
|---|
| Symbol | |
|---|
| ID | 5713096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2223872 |
|---|
| End bp | 2225461 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641268023 |
|---|
| Product | putative integrase |
|---|
| Protein accession | YP_001533438 |
|---|
| Protein GI | 159044644 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGT CAGCCTATCT AAGCCCTTCC AGACACGGTA TATTCTACTT TCGTTGGCCT
CTGCCTCACT CCGGGCGGGA GAAGCGAAGC ACGGTTAAGT TATCGTTAAG AACAAGATGC
CCACATCAAG CGGCAGACTT GGCACGATAC TTGGCTGCAC ATGGAAGATT AGTGAGGGAT
AGCAACGCGT TGGCGGGACT GAGGCAGAGC GAGATACGCG AGAAGGTCCA GACTTACTTC
AAGGCGCAAC TGGACCAGTA CCTTGACTGG CTGGACCGGC GCGGCCTGTC GAAGAACGCC
CTTACCGATG CCCGCGAAGA AATGCTGGAC CACGAAAGCC TGCTAGAGTT GGAAACAACC
TCCCCGATGT GGTTGCCCAT CTCCCGGTTC AAGCGCGTCA TGGACGTTTC AAACGAACAA
TGGGACGCCA GCCAGCCCCG GATCACGTTC CAGCTTCGCC AAGGTCGCCG GGACATGCTC
AAGCGCGTTC TGGACGCCGC TGAGGGCCTT GAGCACTATT CCTATGACGA TGCCCCGGCC
ATCGCTTCCG CCCCTCTAGA GGCGCTCCCA GCCGCTCCCG GTGTCACACT TGAGAAAGCC
ATCGCGGATT ACATGGACGA ACACGCTCAC CGCTGGGACG AAAAGTATAC CGACCAGATA
TGGGCGTTCT TGAACATCCT TGTCGAATAT TGCGGGGCAG ATCGCCAGCT TGCGTCGATC
ACCAAGCAGG ACGCGCAGGA AATCAAGAAG GTTGTCAGAG CATTGCCGCA GAATCGGCAT
GTCAAACCCG AACTTAAAGG CCTCACTTTA CAGGAGGTTG TACAGGTCGA GGGGCACCCC
AAGATTTCGA TTACAACCGT GAACAATCAC ATCTCAAACT TCATTCGCTT CTTCAAGTGG
GCGAAGAACA ACGACTACAC GCCCCACGCT CTGTTTGAAG GCATGAAGGT GGCTAAAGCG
AAAGCGAGCA AAACAGAGCG GAAGCCCTTT AGTCTCGCAC AAACTCAACT CATGTATCAC
GAGTTGACTG AAAACACGTC TGGTCTCGTG CGCAAGCAAA GCCACAAATG GGGCACTCTG
CTTGGCATGT TCACTGGGGC GCGTCTCAAC GAGATATGCC AGCTATTGAT TTCTGACATT
CAGCAGGAAG GCGGTACTTG GTTCTTGAAC ATTGATGACG AAGGTGACGA GCGAAAGCGT
GTGAAGTCAA AGGCCAGCAA GCGGAAAGTT CCCATACACT CAGAACTACT TCGCATAGGC
TTCTTGGAGT TTGTAGAAAG TCGCTCACGG GATGACCGGT TGTTTCAAGA CTTCGAGTAT
CATCGTAACG GCGGTTACGG GCGCAGCCTC AGCCGTTGGT TCAACGAAAA CACTTTTCTC
CCCAAGCTGG GGATCAAAAG CCGAGAGTTG GTTTTTCACA GCTTTCGGCA CACGATGGTT
ACGCGGCTCA GTCAAGCAAA TGTACCCAAC CCAATCGTGC AGTGCGTCGT TGGCCATGAG
CGCGCAGGGG TCACACAGGA CGTTTACTTC GCTGAAGGCT ACACGCTGCC TCAGCTAAAG
GATGCAGTTG AAAGGTTCAG TTGGCAGTGA
|
|---|
| Protein sequence | MKLSAYLSPS RHGIFYFRWP LPHSGREKRS TVKLSLRTRC PHQAADLARY LAAHGRLVRD
SNALAGLRQS EIREKVQTYF KAQLDQYLDW LDRRGLSKNA LTDAREEMLD HESLLELETT
SPMWLPISRF KRVMDVSNEQ WDASQPRITF QLRQGRRDML KRVLDAAEGL EHYSYDDAPA
IASAPLEALP AAPGVTLEKA IADYMDEHAH RWDEKYTDQI WAFLNILVEY CGADRQLASI
TKQDAQEIKK VVRALPQNRH VKPELKGLTL QEVVQVEGHP KISITTVNNH ISNFIRFFKW
AKNNDYTPHA LFEGMKVAKA KASKTERKPF SLAQTQLMYH ELTENTSGLV RKQSHKWGTL
LGMFTGARLN EICQLLISDI QQEGGTWFLN IDDEGDERKR VKSKASKRKV PIHSELLRIG
FLEFVESRSR DDRLFQDFEY HRNGGYGRSL SRWFNENTFL PKLGIKSREL VFHSFRHTMV
TRLSQANVPN PIVQCVVGHE RAGVTQDVYF AEGYTLPQLK DAVERFSWQ
|
|---|
| |