| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_2088 |
|---|
| Symbol | |
|---|
| ID | 5713083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 2212787 |
|---|
| End bp | 2213905 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641268010 |
|---|
| Product | histidinol-phosphate aminotransferase |
|---|
| Protein accession | YP_001533426 |
|---|
| Protein GI | 159044632 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
|---|
| TIGRFAM ID | [TIGR01141] histidinol-phosphate aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATA CGCCCGGCCC CCGCTTCACC CCTCTCGCCC AGTCCCTGCC CGCCACGGTC
CCCTTCGTCG GCCCCGAAAC CCAGGAACGC GCCCGCGGCC GCCCCTTCGC CGCCCGGCTC
GGCGCAAACG AGAGCGCCTT TGGCCCCTCG CCCCGGGCCG TGGCCGCCAT GGCCGAGGCC
GCGACCGGCG CGTGGATGTA TGGCGACCCG GAAAGTCACG ATCTGCGCGC GGCGCTGGCC
GCCCATCACC GGGTCGGGAT GGAGAACGTG ATCGTCGGCG AAGGCATCGA CGGGCTGCTG
GGCTATCTCG TGCGGCTGCT GGTGGCGCCG GGCGATACGG TCGTGACCTC CGCCGGGGCT
TATCCGACCT TCAACTACCA TGTGGCGGGC TTCGGCGGCA CGCTCCATGC GGTGCCTTAC
CGCGACGACC ACGAGGACCC GCAGGCGCTC CTGGACATGG CCCGGGCGGT GGACGCCAAG
GCGATCTATC TCGCCAACCC CGACAACCCC ATGGGCAGCT GGCACGCCGC CGGTGTGATC
ACCGACATGA TTGACGCACT GCCGCCCGGC TGTCTTCTGC TGCTGGACGA AGCCTATATC
GAGCTTGCCC CCGACGGCAC CGCCCCCGAG ATCGCTCCGG ACGACCCCCG CGTCATCCGC
CTGCGCACCT TCTCCAAGGC CCGGGGACTG GCCGGCGCGC GGGTCGGCTA CGGCATCGCC
GCGCCCGGGC TGATTTCCGC CTTCGGCAAG GTGCGCAACC ATTTCGGCAT GAGCCGCGTC
TCGCAAGCCG CGGCCCTCGC CGCGCTACAG GACAGCGACC ACCTCGCGAA GGTGGTGGCC
AAGACCGCCG CCGCCCGCAC CCGGATCGCC GAGATCGGCG CGGCCCATGG CCTGCGCGCC
CTACCCTCGG CCACCAATTT CGTCACGCTG GATTGCGGCG GTGACGGCGC GCGGGCCAAG
GCCATCCTGG AGGCCCTGAT CGCCCGGGAC ATCTTCGTCC GCATGCCCTT CGTCGCCCCC
CAGGACCGCT GCATCCGCAT CTCCTGCGGC ACGCCGGAGA TGCTCGATCT ACTGGCAGAG
CGCCTGCCGG ATGCGCTCGC GGCCGCCACA AAGCCCTGA
|
|---|
| Protein sequence | MTHTPGPRFT PLAQSLPATV PFVGPETQER ARGRPFAARL GANESAFGPS PRAVAAMAEA
ATGAWMYGDP ESHDLRAALA AHHRVGMENV IVGEGIDGLL GYLVRLLVAP GDTVVTSAGA
YPTFNYHVAG FGGTLHAVPY RDDHEDPQAL LDMARAVDAK AIYLANPDNP MGSWHAAGVI
TDMIDALPPG CLLLLDEAYI ELAPDGTAPE IAPDDPRVIR LRTFSKARGL AGARVGYGIA
APGLISAFGK VRNHFGMSRV SQAAALAALQ DSDHLAKVVA KTAAARTRIA EIGAAHGLRA
LPSATNFVTL DCGGDGARAK AILEALIARD IFVRMPFVAP QDRCIRISCG TPEMLDLLAE
RLPDALAAAT KP
|
|---|
| |