Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1947 |
Symbol | rbsA4 |
ID | 5712941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 2036724 |
End bp | 2038268 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641267872 |
Product | ribose import ATP-binding protein |
Protein accession | YP_001533289 |
Protein GI | 159044495 |
COG category | [R] General function prediction only |
COG ID | [COG3845] ABC-type uncharacterized transport systems, ATPase components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.0632394 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.000243405 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGACCGAGA CCAACGGGGC GCGGCCGGTA CTGCGCCTCG ATCAGATCAC CAAGCGCTTC GGCGCGCTCA CGGCCAACGA TGCGATCAGC TTCGATCTGC ACGCGGGCGA GGTCGTGGCC CTTCTGGGTG AGAACGGCGC GGGCAAGACC ACGCTGATGA ACATCCTCTT CGGCCACTAC ACCGCCGATG AAGGCACAGT GGAGGTGTTC GGCCAGACCC TTCCGCCGGG GGTGCCCCGC GCCGCGCTGG CCGCGGGGGT GGGCATGGTG CACCAGCATT TCACCCTGGC CGACAATCTC AGCGTGCTCG ACAACGTCAT CCTCGGGACC GTCCCGCTCT GGCGCGCGGG CCTGGGCAGC GGCGCGGCCC GGCGCAAGCT GCGCGCGCTG GCCGAGGATT TCGGGCTCCA GGTCGACCCG GAGGCCCGCG TCGGCACGCT CTCGGTGGGC GAACGCCAAA GGGTCGAAAT CCTCAAGGCG CTCTACCGCG ACGCGCGGAT CCTGATCCTG GACGAGCCGA CCGCCGTGCT GACCCCGCAG GAGGCCGAGG CGCTCTTTGC GACCCTGCGC CGGGCGGTGG CGCGGGGCAT GTCGGTGATC TTCATCTCCC ACAAGCTGCA CGAGGTGATG AGCGTGGCCC ATCGCGTCGT GGTGCTGCGC CACGGCCGCG TCGTCGGCCG GGTCGCCACG GACGAGACCG ACCGCCACGC GCTGGCCGAG ATGATGGTGG GGGCCGAGAT CACCGCCCCC GCGCCCCGCC CGGCGACCCC CGGCGCGGCC CTGATGACGC TCGACCGGGT GTGCACCGAC GCCCGGGGCA CCGCCACCGG GCTGCGCGAC GTGTCGCTGA CCCTGCGCGC GGGCCAGATC ACCGGGCTTG CCGGGGTCTC GGGCAACGGG CAGGCGGCGC TGGCGGACCT GATCGGCGGG CTTATCGCGC CCGTCGCGGG CGCTCTGCGC CTCGGCAACG CAGAGGTCGC CGACTGGTCG CCCCGCGCGG CCCTGGCCCA GGGCATCGGC CGCATCCCCG AGGACCGCCA CAAGACCGGC ACCATCGCCG ATTTCACCCT GACCGAGAAC GCCATCCTGG AGGCTTACCC CAAGGCGCAA TTCTCCCGCT CGGGCTGGAT GCGCTGGGGC GCCGCCGAAA GCTTCGCGCG CGACGTGATC GCCAGCTACG ATGTACGCTG CCCGGGGCCG GAGACGCCCA TCCGGCTGCT GTCGGGCGGC AACATGCAGA AGCTGATCCT CGGTCGCGTG CTGGAGGACG GCCCCCGCAT CGTGCTCGCC AACCAGCCGG TGCGCGGGCT CGACATCGGC GCGGTGACCT ATGTGCAGGA GCAGTTGATC GCCGCGCGGG ACGGCGGCGC GGCGGTCCTG CTGATCTCCG AAGACCTCGA CGAGGTGCTG GCGCTGTCGG ATGTCATCCA CGTCATGTCC GAGGGGCGGC TCTCGCCAGA GTTTGCGCGC GGCTCCATGA CCCCGGCGCA GCTGGGCGTC TGGATGGCGG GCGACGGCTT CGCGGAGGAT CCCCATGCGG CTTGA
|
Protein sequence | MTETNGARPV LRLDQITKRF GALTANDAIS FDLHAGEVVA LLGENGAGKT TLMNILFGHY TADEGTVEVF GQTLPPGVPR AALAAGVGMV HQHFTLADNL SVLDNVILGT VPLWRAGLGS GAARRKLRAL AEDFGLQVDP EARVGTLSVG ERQRVEILKA LYRDARILIL DEPTAVLTPQ EAEALFATLR RAVARGMSVI FISHKLHEVM SVAHRVVVLR HGRVVGRVAT DETDRHALAE MMVGAEITAP APRPATPGAA LMTLDRVCTD ARGTATGLRD VSLTLRAGQI TGLAGVSGNG QAALADLIGG LIAPVAGALR LGNAEVADWS PRAALAQGIG RIPEDRHKTG TIADFTLTEN AILEAYPKAQ FSRSGWMRWG AAESFARDVI ASYDVRCPGP ETPIRLLSGG NMQKLILGRV LEDGPRIVLA NQPVRGLDIG AVTYVQEQLI AARDGGAAVL LISEDLDEVL ALSDVIHVMS EGRLSPEFAR GSMTPAQLGV WMAGDGFAED PHAA
|
| |