| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1938 |
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| Symbol | truA |
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| ID | 5712932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 2027520 |
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| End bp | 2028293 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267863 |
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| Product | tRNA pseudouridine synthase A |
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| Protein accession | YP_001533280 |
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| Protein GI | 159044486 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.615148 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0000799616 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCGAGAT TTGCCCTGAA AATAGAGTAT GATGGCGCCC CTTTCGCGGG CTGGCAGCGC
CAGCGCGAAC AGCCCTCCGT GCAAGGCGCG GTGGAGGCGG CGTTAAGGGG TCTGCAGCCC
GATCATGCCG GGATCGCGGC GGCGGGGCGG ACGGATGCGG GGGTGCATGC GCTGGGTCAG
GTGGCCCATG TGGATCTGGC GCGCGACTGG GATCCGTTCC GGCTGTCCGA GGCGCTGAAC
GCCCATCTGC GACCGGCGCC GGTGGCGGTG CTGGCGGCGG CGCGGGTGGG GGAGGATTTT
CATGCGCGAT TCTCGGCACT TGAGCGGTCG TACCTCTTCC GTCTCCTGGT GCGGCGCGCG
CCGGCGACCC ATGACGCGGG GCTGGTGTGG CGGGTGATGA ATCCGCTGGA TGTCGAGGCC
ATGCGCGAAG GGGCCAAGTA CCTGATCGGA AAGCATGATT TCACGACTTT CCGGTCGACC
ATGTGCCAGG CGGCCTCGCC GGTCAAGACG CTCGACGAGA TCACGATCGA GGAGAGCCCC
CGGGACGCGG GCACGGAGTT CCGGTTCCAC CTTCGGGCGC GAAGTTTCCT GCATAATCAA
GTCCGTAGCA TCGTCGGCAC CCTGGAGCGC GTCGGCGCCG GAGCGTGGGA TCCGGCTGAT
GTGAAGACCG CGCTCGAGGC CAGGGACAGG GCGGCTTGCG GGCCGGTCTG CGCGCCCCAG
GGGCTCTATT TGCGCGCCGT GCGCTACCCC GAAGACCCGT TCAAACCGGC GTAA
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| Protein sequence | MPRFALKIEY DGAPFAGWQR QREQPSVQGA VEAALRGLQP DHAGIAAAGR TDAGVHALGQ
VAHVDLARDW DPFRLSEALN AHLRPAPVAV LAAARVGEDF HARFSALERS YLFRLLVRRA
PATHDAGLVW RVMNPLDVEA MREGAKYLIG KHDFTTFRST MCQAASPVKT LDEITIEESP
RDAGTEFRFH LRARSFLHNQ VRSIVGTLER VGAGAWDPAD VKTALEARDR AACGPVCAPQ
GLYLRAVRYP EDPFKPA
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