Gene Dshi_1850 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1850 
Symbol 
ID5712842 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand- 
Start bp1929104 
End bp1929808 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content66% 
IMG OID641267774 
Producthypothetical protein DUF1223 
Protein accessionYP_001533193 
Protein GI159044399 
COG category[S] Function unknown 
COG ID[COG5429] Uncharacterized secreted protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.78022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value0.625735 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCC TTGGCACGCT ATTCGCCCTC TGGGCCGCGG CATCCGTGGT CACAGCCCCC 
GCCGCTTCGG CTGACGAAAA GACCGTTGTG GTGGAGTTGT TCACCTCCCA AGGGTGTTCC 
TCCTGTCCAC CGGCGGATGC CCTGCTGGCA GAACTCGACA AGTCCGCGGA CGTGATCGCG 
CTCGCGCTGC ACGTGGATTA CTGGGACTAT ATCGGCTGGA AGGACAGCTT CGCCGACCCC 
GAGAACACCG AGCGGCAGCG CGGCTATGCC CGGGCCGCCA AGGCGCGCAG CATCTTTACC 
CCGCAAATGG TGATCGGCGG CGTCGATCAC GTGATCGGGT ACAAGCCGAT GGATGTGGCC 
AATACCGTGC AGAAGCATCG CGCCGCGCCC GACGGCGCCA CGGTGTCGGC CCGGCTGAAT 
GGCGATACGG TGATCATCCG CCTGAGCCCC GGCGACGCGC GGGGCGCCAT GACCGTGAGC 
CTGGTCGGCT ATGTCCCGAA GGAGACGGTG AAGATCAAGC GCGGCGAGAA CGCGGGCAAG 
ACCATCACCT ATACCAACAC GGTGCGGGAA TTCGTCTCCC TGGGCACCTG GGACGGACGG 
GCGCAGAAGG ATCTGCGTCA TCCCAAACCC GCGGGAGAGG CGGCGGTGGT GTTGGTGCAG 
AAGGCCTCCC ACGGGCCGAT GGTGGCCGCT GCGCGGGTGG AATGA
 
Protein sequence
MRILGTLFAL WAAASVVTAP AASADEKTVV VELFTSQGCS SCPPADALLA ELDKSADVIA 
LALHVDYWDY IGWKDSFADP ENTERQRGYA RAAKARSIFT PQMVIGGVDH VIGYKPMDVA 
NTVQKHRAAP DGATVSARLN GDTVIIRLSP GDARGAMTVS LVGYVPKETV KIKRGENAGK 
TITYTNTVRE FVSLGTWDGR AQKDLRHPKP AGEAAVVLVQ KASHGPMVAA ARVE