| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1714 |
|---|
| Symbol | |
|---|
| ID | 5713280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1781528 |
|---|
| End bp | 1783372 |
|---|
| Gene Length | 1845 bp |
|---|
| Protein Length | 614 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641267631 |
|---|
| Product | ABC-transporter ATP-binding protein |
|---|
| Protein accession | YP_001533057 |
|---|
| Protein GI | 159044263 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0650863 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGCC CCCCTCTCCT TCAGCTTTCC GATATCCGCC TCGGCTATGG CGGTGACCCG
GTGTTCGCCG GGCTCGACCT GGTGATCCAG CCCGGCGACC GCGTGGCGCT CGTGGGCCGC
AACGGCTCGG GCAAATCCAC CCTGATGAAG GTCATGGCCG GCCTGGTGGA GCCCGACACA
GGCCAGGTCA TCGCCGCCCC CGGTACCTCC ATCGGCTATA TGGAGCAGGA CCCGGACCTG
TCGGGCTTCC CCACCCTGGG CGATTTCGCC CGCGCCGCGC TGGATCCGTC CGAAAGCTGG
CGCATCGACA TGGCCGCCGA GGGGCTGAAG CTCGACCTCG ATATCGCCAC CGACGCCGCC
TCCGGGGGCG AACGCCGCCG CGCCGCCCTC GCGCGCCTGC TGGCCGAGGC CCCGCACCTG
ATGCTGCTCG ACGAGCCGAC CAACCATCTC GACATCGAGG CCATTTCCTG GCTCGAAGAC
CACCTCACCA GCACCCGGGC GGCCTTCGTG CTGATCTCCC ATGACCGGGC GTTCCTGAGC
GCGCTGACCC GCGCCACCCT TTGGATCGAC CGCGGCATGG TGCGCCGGCA GGAGCGTGGC
TTTAGCGATT TCGAGGCCTG GCGCGACAAG ACCTGGGAGG AAGAGGACCT CGCCCGCCAC
AAGCTCGACC GCAAGATCAA GGCCGAGGCC CGTTGGGCGG TCGAGGGCAT CTCCGCCCGG
CGCAAGCGCA ACCAGGGCCG GGTCCGTGCG CTCGGCGAGC TGCGCCAGCA GCGCGCCGAC
ATGATCCGCC GCCAGGGGAC CGCCGACATG GCGCTGGAGG CGGGCAGATC CTCCGGCAAG
CGCGTGATCG AGGCGCGCGG CATCACCAAG TCCTTCGGCG ACCGCACCAT CCTACGCCCC
TTCGATCTGC GCGTGCTGCG CGGCGACCGG ATCGCCTTTG TCGGACCCAA CGGCGCGGGC
AAGACCACGC TGCTGAAGAT GCTCACGGGG GAAATCGCGC CGGACGACGG CACCGTCACC
CTGGGCACCA ATCTCGAGAT CGCCGTCTTC GACCAGCGCC GTGAGGGGCT CGACCCCGAC
GCCTCGCTCT GGGAGAACCT GACCGGCGAC CCGGAAATGC GCGTGTCGGG CCAGGCCGAC
CAGGTCATGG TCCGCGGCAC GCCGCGCCAC GTGGTGGGCT ATCTCAAGGA TTTCCTGTTC
ACCGATGACC AGGCCCGCTC CCCCGTCCGG GCGCTGTCGG GCGGCGAGCG TGCGCGGCTC
TTGCTGGCGC GGATCATGGC GCGGGAAAGC AACCTGCTGG TGCTGGACGA GCCGACCAAC
GATCTCGACA TCGAAACCCT CGACCTGCTG CAGGAAATCC TGTCGGACTA CCCCGGCACG
GTGCTTCTGG TGAGCCACGA CCGGGATTTT CTCGACCGGG TCGCCACCAC CACCATCGCG
ATGGAAGGCG ATGGGCGCGC CACGGCTTAT GCGGGCGGCT GGTCCGACTA CCGCAGCCAG
CGCGCAGCGG GGGGTGGCAC ATCGGCACCT CCGCCCAAAT CCGCTGGAAA ACCCGGCCCC
AAGAGCCCAA CCTCAAATTC TGATTCAATC CGAAAATCAA ATGCTTCCGG CCTGTCCTTC
ACCCAACGCC ACAGGCTCGA CGCCCTGCCC GGCGAGATCG ACCGCCTGAC CGCCGAGATC
GCCAAGCTCG AAGAGTTCCT TGCCACACCG GACCTTTACA CGCGCGAGCC TGCGAAGTTC
AAAAAGGCCA CCGAGGCGCT GGTCGACCGC CAGACCACCC TGGCCGCGGC CGAAGAAGAA
TGGCTCGACC TGGAATCACG CGCCGAGGCC GAGACCACCC GTTAA
|
|---|
| Protein sequence | MARPPLLQLS DIRLGYGGDP VFAGLDLVIQ PGDRVALVGR NGSGKSTLMK VMAGLVEPDT
GQVIAAPGTS IGYMEQDPDL SGFPTLGDFA RAALDPSESW RIDMAAEGLK LDLDIATDAA
SGGERRRAAL ARLLAEAPHL MLLDEPTNHL DIEAISWLED HLTSTRAAFV LISHDRAFLS
ALTRATLWID RGMVRRQERG FSDFEAWRDK TWEEEDLARH KLDRKIKAEA RWAVEGISAR
RKRNQGRVRA LGELRQQRAD MIRRQGTADM ALEAGRSSGK RVIEARGITK SFGDRTILRP
FDLRVLRGDR IAFVGPNGAG KTTLLKMLTG EIAPDDGTVT LGTNLEIAVF DQRREGLDPD
ASLWENLTGD PEMRVSGQAD QVMVRGTPRH VVGYLKDFLF TDDQARSPVR ALSGGERARL
LLARIMARES NLLVLDEPTN DLDIETLDLL QEILSDYPGT VLLVSHDRDF LDRVATTTIA
MEGDGRATAY AGGWSDYRSQ RAAGGGTSAP PPKSAGKPGP KSPTSNSDSI RKSNASGLSF
TQRHRLDALP GEIDRLTAEI AKLEEFLATP DLYTREPAKF KKATEALVDR QTTLAAAEEE
WLDLESRAEA ETTR
|
|---|
| |