| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1449 |
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| Symbol | |
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| ID | 5712626 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1506778 |
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| End bp | 1509000 |
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| Gene Length | 2223 bp |
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| Protein Length | 740 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267362 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001532792 |
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| Protein GI | 159043998 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.389596 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTCA CAAGACCCCT GACCGCCACC GCGGTCGCCG CCCTGATGCC AACCCTCGCC
CTCGGCCAAT CAGCCACGCC GGGCACCACC ATCGAACTGG AACCGATCGT CATCGACGGC
ACCAGTGGCG CCCTGGCCAC CGCTGAGGAC CGCCAGCGCG CCACCCCGGG CGGGACCGAC
CTGCTGCGAG GCGACAGTTA TCGCGACAGC GCGACCGTGA CCCTGTCCGA TGTGCTGGAC
GGGGCGCCGG GTGTGGTGGT GCAGGACTTC TTCGGCGGGT TCGATCAACC CCGGGTACAA
ATCCGCGGAT CGGGCCTGCA ACAGAACCCG GTCGAACGCG GTGTGCTGTT CCTGCAGGAC
GGCCTTCCGC TCAACCAGGC GGATGGCTCC TATATCGTGG GCCTGTCCAA TCCGAGGGCC
GCCGAGTTCG TCGAGGTCTA TCGCGGCTAC ACCGCGAACC GGCTCGGGGC GACGGTGCTG
GGCGGGGCGC TGAACTTCGT CTCGCCCACC GGCTCCTCCG CCCCGGGCCT GAGCTTTGGC
CTGACCGGGG GCAGTTTCGG CTATCTCGAA GGCGAGGCGA TCGCCGGATG GCAGGGCGAC
GGGTACGATG CCCATCTGCG CTTCGAGGCC CTGACCCGCG ACGGCTTTCG GGACGACAAC
AACGACTCCG AGCGGCAGGC CTTCAACGCA AACCTCGGGA TCGAGCTGAC CGACCAGATT
TCCGCCCGGG TCTTCGCGGG CGTCACCGAC CTCTCCTTCG GCGTGCCCGG ACCCATCACC
GCCGCGGCAC TGGACCGGGA CCCCGCCTCC GTCCATGCCG GGCCGGTCTT CACGCCGGGG
ACGCCGCCGA GCGTCGCCAA TCCGGGGCCG AACGTGCCGC GGGACGACCC GGGGCGCGAA
GCGACCCAGG CGCGCATCGG GGCCCGGATC ACCGGCGAGT TCGGCGCGAG CGTTGCGGAT
CTCGCCTTCG GCTATGCCCG CACCGAAGAC AGCTTCCGCT TCCCTGTGTC CTCGGGGGTC
CGCGAAACGG ACGGGGACGA TTTCACCTTC GTAGCACGCT ATGCCTATCG CCCCGACCCT
GAGGCGGCCC TGCCGCTCTT CGAGGCCACC GCCTCCTACA TCACCGGCAC GGCGGACCGC
GACTATTTCC TCAACGAGGC GGGCACGCGG GGCGCACGGT TCGGCCGCAA CCGTCTTTCG
GCCGACACCC TGACGGTCTC GGCCATCGCC AATATCCCCC TTTCGGACCG GCTGGTCCTG
TCCCCGGGCA TCGCGTGGTC CCATGCGACA CGGGACAATG ACGACCGGTT TGGCGCCGCC
ACACGGCCCA CGCTGGCCTT CAACCCGGCG ATGCCCGATA TGGCCCTGCC CCCGGGCGTC
GTCCCTTTCG AGGACACGAG CTATTCCCGC ACCTACGAGG GCTGGAGCCC CTCGCTCGCC
CTCAGCTACC AGGTGAACGA CCGCAACCTC GTGTTCGGCG CGATCAGCCG GTCCTTCGAG
CCGCCGACCC ATAACGACCT GCTCGCGACC ATCAACGGCA CCCCGAACAG CAGTGCGGGC
CGCCCGCAAC CACCGAACCC GGCCTTTCCC GCCTCCGCCT TCGCCACTCC GGACCTGGAG
GCGCAGACCG CGACCACCGT CGAGATCGGC TGGCGCGGCC AGGTCGGCGC GTTCGATGTC
GATGCGGTGG TCTATCACGC CGCGATCGAA AACGAGCTGC TCTCGCTCCG CGACGTCACC
GGGGCCTCGC TCGGCGCCGT CAATGCCGGA GAGACCACCC ACAAAGGGGT CGAGCTCGGG
GTCTCCGCCG TGTTCGGCGA TGTCGCTGCC CGGCTCGCCT ACACCTATCA AGACTTCCGC
TTCGACGACG ATCCCGTGCG GGGCAATAAC CGCCTCGCGG GCGCCACGCC CCATGTGATC
GACCTCGCGC TTGATTGGGC CGCAACCGAC CGGCTCAACC TCGGGGGACG GCTTTACTGG
CGGCCGGTCA AGACCCCGGT GGACAATCTC AATACGCTCC ACGCGGATCC GTTCGCGACG
CTGGACCTCA ATATGCGCTA TGCCGTGACC GAAACCACCA CAGCGTTCTT CGAGATCCGC
AACGCGACCG ACGAACGCTA TGCGGCCTCA ACACTGATCG TCGACCAGGC GCGCAACGAT
CAGGCCGCCT TCATTCCCGG GGACGGCCGA TCCTTCTATA TCGGTCTGCG TTCAACATTC
TGA
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| Protein sequence | MPFTRPLTAT AVAALMPTLA LGQSATPGTT IELEPIVIDG TSGALATAED RQRATPGGTD
LLRGDSYRDS ATVTLSDVLD GAPGVVVQDF FGGFDQPRVQ IRGSGLQQNP VERGVLFLQD
GLPLNQADGS YIVGLSNPRA AEFVEVYRGY TANRLGATVL GGALNFVSPT GSSAPGLSFG
LTGGSFGYLE GEAIAGWQGD GYDAHLRFEA LTRDGFRDDN NDSERQAFNA NLGIELTDQI
SARVFAGVTD LSFGVPGPIT AAALDRDPAS VHAGPVFTPG TPPSVANPGP NVPRDDPGRE
ATQARIGARI TGEFGASVAD LAFGYARTED SFRFPVSSGV RETDGDDFTF VARYAYRPDP
EAALPLFEAT ASYITGTADR DYFLNEAGTR GARFGRNRLS ADTLTVSAIA NIPLSDRLVL
SPGIAWSHAT RDNDDRFGAA TRPTLAFNPA MPDMALPPGV VPFEDTSYSR TYEGWSPSLA
LSYQVNDRNL VFGAISRSFE PPTHNDLLAT INGTPNSSAG RPQPPNPAFP ASAFATPDLE
AQTATTVEIG WRGQVGAFDV DAVVYHAAIE NELLSLRDVT GASLGAVNAG ETTHKGVELG
VSAVFGDVAA RLAYTYQDFR FDDDPVRGNN RLAGATPHVI DLALDWAATD RLNLGGRLYW
RPVKTPVDNL NTLHADPFAT LDLNMRYAVT ETTTAFFEIR NATDERYAAS TLIVDQARND
QAAFIPGDGR SFYIGLRSTF
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