| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1421 |
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| Symbol | |
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| ID | 5712598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1473533 |
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| End bp | 1474705 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641267334 |
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| Product | ribose ABC transporter |
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| Protein accession | YP_001532764 |
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| Protein GI | 159043970 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.194337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGAATGC GAATTTTGGC ATCTTTGGGG TTGGTGTCGA CCTTGATGAT AAACACTGCC
GCGATGGCAG AGGGCCTCGA AGAGTTGCCG CCGAAGCTTC AGGCCGCCTA TCAGGGGGTC
GACGAGGGCC AGCCGATCGG GACGTCGGCC TATCGCGACT GGACGCCTCG GTCCGGTCCG
CCCTGGACCA TCGGCTATGC AAGCTCCTAT GCCGGCAACA CGTGGCGCGC AGAGGGCTTG
AGCCGTCTGA CCGAGGATTT GCTGCCGGTT TACAGGCAGG CGGGGCTGGT TGACGAGATC
ATCGTCACGC AATCGGATCT CAACGACGCG CGCCAGATCC AGCAGATCCG ACAGCTTGTG
GACCAGGGCG TGGATGCGAT CATCGTGTGC TGCTCGAACC CGGTCGCCCT GAACAAGGCC
GTCGAATATG CCTACTCCAA GGGTGTCGTG GTGTTTTCCT ATTCGGGCTA TCTGACGTCG
GACAAGGCGC TGAACGCCTC GTCGAACTAT ACGCTGGGCG GCTATGAAAT CGCCAAGGCG
ATGATCGAGG AAGTGGGCGG CGAGGGGAAC TTCCTGCTGG TGTCGGGGAT CGCGGGCGCG
GCCTCTTCGG AGAGCTTCGA CACCGGCGCC ATGCGCGCCT TGGAGGAGTT TCCGAACGCC
AAGCTGGTTG GCCAGGTCTG GGGCAACTGG ACCGACCAAG TCGCCCAGAC CGAGGTTCAG
AAGTTCCTCG CAACCAACCC CGCGCGGATT GACGGGATCA TCGCGCAGGG CTCCCAGGAA
ACCGGTGTGC TGAAGGCGGT GTTGCAGTCG GGCCGCGAGG TGATGCCGAT CTCGCTGGCA
GGCTCGGCCG GAGCGGCTTG CTATCTAAAG CAGAACCCCG ATTGGATCAG CCATGCGTTC
CAGATCTGGC CCCCGGGCGA CGAGATGGAA CTGGGCTTCA ACTCGGTGAT CCGCACGCTG
CAGAACCAGG GTCCCAAACT GCAATCGATC CTGCGCGGGG TCTACCGGCT GCCCGCGGCG
GAATACGTGG CGAGCCTGGG CGATGACTGC TCGGTCGACT CGACCGCGTA CATCCAGCCG
GGCATCGACG TCTGGTTCCC CGACGACAAG GCCGCCGGCT ACTTCCTGCG GCCGGAAAAC
CCGCTCGATT GGGCCGCCAA GAACGTCAAC TGA
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| Protein sequence | MRMRILASLG LVSTLMINTA AMAEGLEELP PKLQAAYQGV DEGQPIGTSA YRDWTPRSGP
PWTIGYASSY AGNTWRAEGL SRLTEDLLPV YRQAGLVDEI IVTQSDLNDA RQIQQIRQLV
DQGVDAIIVC CSNPVALNKA VEYAYSKGVV VFSYSGYLTS DKALNASSNY TLGGYEIAKA
MIEEVGGEGN FLLVSGIAGA ASSESFDTGA MRALEEFPNA KLVGQVWGNW TDQVAQTEVQ
KFLATNPARI DGIIAQGSQE TGVLKAVLQS GREVMPISLA GSAGAACYLK QNPDWISHAF
QIWPPGDEME LGFNSVIRTL QNQGPKLQSI LRGVYRLPAA EYVASLGDDC SVDSTAYIQP
GIDVWFPDDK AAGYFLRPEN PLDWAAKNVN
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