Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_1404 |
Symbol | |
ID | 5712580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 1457511 |
End bp | 1458866 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641267316 |
Product | branched-chain amino acid ABC transporter |
Protein accession | YP_001532747 |
Protein GI | 159043953 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.977917 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTAATT CGGAAATCAG CCGCCGTCGC GTGCTGAAGA CAGGCGCTGC CACCGGCGCA GGCCTGGCAC TGCCCACCAT CTTCACCGGC GCCGCCTGGT CGGCGGGCTT CACCAACGAG CCCACCGGCA GCACCGTCAC CCTGGGCTTC AACGTGCCCC AGTCCGGCCC CTATGCCGAC GAGGGCGCCG ACGAGCTGCG CGCCTACGAG CTGGCGGTCG AGCACCTCAA CGGGGGCGGC GATGGCGGCA TGATGAGCAC CTTCAGCTCC AAGGCGCTGC AGGGCAACGG GATCCTCGGC AAGAAGGTCG AGTATGTCAC CGGCGACACC CAGACCAAGT CCGACGCCGC CCGCGCCTCG GCCCGCTCGA TGATCGAAAA GGACGGCGCG GTGATGATTA CCGGCGGGTC GTCCTCCGGC GTGGCCGTGG CCGTCCAGGC GCTCTGCCAG GAGGCGGGCA TCATCTTCAT GGCGGGCCTC ACCCATTCCA ACGACACCAC CGGCAAGGAC CGCAAGGCCA ACGGCTTCCG GCATTTCTTC AACTCCTACA TGTCCGGCGC GGCACTCGCC CCGATCCTGG CCAAGAACTA CGGCACCGAC CGCAAGGCCT ATCACCTGAC CGCCGATTAC AACTGGGGCT ACACCACCGA AGAAGCCGTG CGCTCCTCCA CCGAAGCCAT GGGCTGGGAG ACGGTGAACA CCGTTCTGAC GCCGCTCACC CAGACCGACT TCTCGGCCTA TATCACGCCC GTGCTGCAGT CGGACGCGGA TGTGCTGGTG CTCAACCACT ACGGCGGCAA CATGGTGAAC TCGCTGACCA ACGCGGTGCA GTTCGGCCTG CGCGACCGGG TGGTGAACGG CAAGAACTTC GAGATCGTCG TGCCGCTCTA CTCGCGCCTG ATGGCCAAGG GCGCCGGTGC CAACGTCAAG GGCATCTTCG GCTCCACCAA CTGGCACTGG TCGCTGCAGG ACGCAGGCTC CCAGGCCTTC GTGCGCTCCT TCGGCACCAA GTACGGCTTC CCGCCGTCCC AGGCCGCCCA TACCTGCTAC GTGCAGGCGC TGCTCTACGC GGACGCGGTG GAGCGCGCGG GCTCCTTCAA CCCCTGTGCC GTGGACGAGG CCCTGTCGGA TTTCGAATTC GACGGGATGG GCAACGGCCC GACCCTCTAC CGCGCCGCCG ACCACCAGTG CTTCAAGGAC GTGCTCGTGG TGCGCGGGAA GGAAAACCCG ACCTCCGAGT TCGACCTGCT GGAGATCGTC GAGGTGACCC CCGTCGAGCA GGTGACCTAT GCCCCGGACC ACCCCCAGTT CGGCGGCGCC GAGGCGACCC TCGGGACCTG CAACCCGGGC GCCTGA
|
Protein sequence | MSNSEISRRR VLKTGAATGA GLALPTIFTG AAWSAGFTNE PTGSTVTLGF NVPQSGPYAD EGADELRAYE LAVEHLNGGG DGGMMSTFSS KALQGNGILG KKVEYVTGDT QTKSDAARAS ARSMIEKDGA VMITGGSSSG VAVAVQALCQ EAGIIFMAGL THSNDTTGKD RKANGFRHFF NSYMSGAALA PILAKNYGTD RKAYHLTADY NWGYTTEEAV RSSTEAMGWE TVNTVLTPLT QTDFSAYITP VLQSDADVLV LNHYGGNMVN SLTNAVQFGL RDRVVNGKNF EIVVPLYSRL MAKGAGANVK GIFGSTNWHW SLQDAGSQAF VRSFGTKYGF PPSQAAHTCY VQALLYADAV ERAGSFNPCA VDEALSDFEF DGMGNGPTLY RAADHQCFKD VLVVRGKENP TSEFDLLEIV EVTPVEQVTY APDHPQFGGA EATLGTCNPG A
|
| |