| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1397 |
|---|
| Symbol | |
|---|
| ID | 5712573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1449132 |
|---|
| End bp | 1450748 |
|---|
| Gene Length | 1617 bp |
|---|
| Protein Length | 538 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641267309 |
|---|
| Product | phospholipase/lecithinase/hemolysin-like protein |
|---|
| Protein accession | YP_001532740 |
|---|
| Protein GI | 159043946 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.524599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCAACATC GCCCGCCCCG GGCGAAACTT GACGCCACGA CCGGGAAAAC CCGGCACAGC
CCACCAACAG AGGACACCCA GCTGATGAGT TTCGCGTTTT CCACCAAGGT ATTTTTCGGC
GACAGCCTGA CAGATGACGG CACCCTTTTT TCCCTGACCA GCGATGTCGC CAGCGTCGCG
GTTCCGCTGG AAGCGGCCGG CTACAATCAG CGCTTCACCA ACGGCCTGGT CTTCGCCGAA
TATTCCAGTG ACCTGCTCGG AGCGAGCGAG ACCCTGAATT TCGGCATCGG CGCCGCCCGC
ATGCTGGGGG AGCTGACCCT GCGCGACCTG GCGGAAAACG CAGGCGTGAC CGAGTTTCTG
ACCGTCCCGC TGGAGGATCC GCGGCTCGAT CTCGACATCA ACCTCTCTGC GCAGCTGGAC
CGGTATCTCG CCGATACCGC GGGGCAGGAC CGGGCCGACA GCAGTGCGAC CCTCTTCATC
GGCGCCAATG ACTACCTCAA CTTCGCCCCG TCCTCGCCCG ACCGGATCGT GATCGAGGGC
CTGGCGCTCA TGGTCCAGAT CACCGATGCG ACCCTCGACG CCGCCCAGCG TCTTGCGGAT
GAAGGCGTCG GCCAGATCGT GATCAACAGC CTGCCGTCTG GCGATTTCTT CCCGGGCGTG
CGGGCCGATC CGCTGCTGGC GCCGGTGGCC GACATCGTGC TGTCGCTGCA TAACACCCGT
CTCGAACGCG GGGTCGAGGC CCTGCAGGAG GCCGGCATCA ACGCGGTCTA CGTGGATATC
GAGGCGATCA CCTCGACCAT CGTGGACGAT CCGCTGAACT TCGGGATCAC CGCGCCCTAT
GACGAGGTCA AGGTGCTGGA TGACGACCCG ACCGATCCGG TGATCAATCC GGCGCTGGAC
GGTGTGCCGC TGGACCAGGT GGCGTTCTTC GACCCGGTGC ATCCCACCGA TACCGTGCAC
GGCGTGCTGG GCAGTTTCCA TGCCGCCGCA CTGACCGGCA CCGTCACCAT CGGCAATGAT
CGCAGCAGCA TCCGCACGCT GCGCAGCGAA GAGGACGATC TGGTGCTCGC AGGCGGCGGG
CGCGATGTGC TCGGGCTGCT GGACGGCGAT GACATCGCCT TCGGTGAGGG CGATGACGAC
TTCATCTTCG GTGCGCTCGG GCGTGACATC ATCTCGGGCG GCGCCGATGA CGACGTGCTG
TTCGGTGGTG CCGACGATGA CGTGCTGGTC GGCGGCACCG GCGACGATGT CACCCGCGGG
GGCCTTGGCG ATGACGTGCT GATCGACGGG CTGGGGTCCG ACTTCGCCGT GGGCGGGGGC
GGCAATGACC TCTTCATCTT CCGCGAAGCC TCCCTGATCG GTGGCGATGG AACCTTCGAC
GAGAATACCT TCCGTGGCGG CGCCGGGTTC GACACCCTGG CCATGGTGCT CACCGAGGAA
ACCGCAGAGG CCTTCGCGCT GACCTCGGCC ACCGAGGGGC AGGCGCAGGC GCTGAGCGCG
CTCGGCATCA CGGCCGAACG GATCGAGGAC GTGCGGGTGT TCACCGACCT GGCCGAACTC
AACCAGTTCA ACGACCTCGC CCGGCTCGGC GAGGCCGATC TCTGGGCGCT GGTCTGA
|
|---|
| Protein sequence | MQHRPPRAKL DATTGKTRHS PPTEDTQLMS FAFSTKVFFG DSLTDDGTLF SLTSDVASVA
VPLEAAGYNQ RFTNGLVFAE YSSDLLGASE TLNFGIGAAR MLGELTLRDL AENAGVTEFL
TVPLEDPRLD LDINLSAQLD RYLADTAGQD RADSSATLFI GANDYLNFAP SSPDRIVIEG
LALMVQITDA TLDAAQRLAD EGVGQIVINS LPSGDFFPGV RADPLLAPVA DIVLSLHNTR
LERGVEALQE AGINAVYVDI EAITSTIVDD PLNFGITAPY DEVKVLDDDP TDPVINPALD
GVPLDQVAFF DPVHPTDTVH GVLGSFHAAA LTGTVTIGND RSSIRTLRSE EDDLVLAGGG
RDVLGLLDGD DIAFGEGDDD FIFGALGRDI ISGGADDDVL FGGADDDVLV GGTGDDVTRG
GLGDDVLIDG LGSDFAVGGG GNDLFIFREA SLIGGDGTFD ENTFRGGAGF DTLAMVLTEE
TAEAFALTSA TEGQAQALSA LGITAERIED VRVFTDLAEL NQFNDLARLG EADLWALV
|
|---|
| |