| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1367 |
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| Symbol | amaB |
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| ID | 5712543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1420347 |
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| End bp | 1421621 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267279 |
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| Product | allantoate amidohydrolase |
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| Protein accession | YP_001532710 |
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| Protein GI | 159043916 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01879] amidase, hydantoinase/carbamoylase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.388728 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCCG ACACCGTTAC CGCCCCGAAT GCGCCGGGAG AAAACCTGAA GATCAATGGC
GACCGTCTGT GGGACAGCCT GATGGAGATG GCGCGGATCG GGCCGGGCGT GGCGGGCGGC
AACAATCGCC AGACCCTGAC CGATGCCGAT GCCGAGGGGC GCGCGCTCTT CCGGCGCTGG
TGCGAAGAGG CGGGCTGCAC CATGGGGCTC GACACCATGG GCAACATGTT CGCCCGGCGC
GAGGGCACCG ACCCGGATGC CCTGCCGGTC TATGTCGGCT CGCACCTCGA CACCCAGCCC
ACGGGGGGCA AGTATGACGG TGTGCTCGGC GTGCTCGGCG GGCTGGAGAT CATCCGCTCG
CTCAACGATC TCGGGATCAA GACAAAGCAT CCCATCGTCG TGACCAACTG GACCAACGAG
GAGGGCACCC GGTTCGCGCC GGCCATGCTG GCCTCGGGCG TCTTTGCGGG CAAGCACAGC
CAGGATTGGG CTTACGCCCG CGTCGATGCG GAGGGCAAGC GGTTCGGCGA TGAGCTCAAG
CGGATCGGCT ATGTGGGCGA CGAGCCCGTG GGGGACCGCA AGATGCACGC GTTCTTCGAG
TTGCATATCG AGCAGGGCCC GATCCTGGAA GCCGAAGGCA AGGAGATCGG GGTCGTCACC
CATGGCCAGG GCCTGCGCTG GATCGAGTGC ACGGTGACCG GCAAGGAAAG CCACACCGGC
TCCACCCCGA TGAACATGCG CAGGAACGCC GGCCGCGGGC TCGCACGGAT TACTGAACTT
GTCCACGAGA TTGCCATGAA GAACCAGCCC AACGCCGTAG GTGCCATTGG GCATATCGAC
GTCTATCCGA ACTCGCGCAA CATCATCCCC GGCAAGGTGG TCTTCACGGT TGATATGCGG
ACGCATCTGC TGGACAAACT CAACGCTATG GTTGCCGAGT TCGACGAGAA AGCGCCGAAG
CTCTGTGAAG AGATCGGGGT GGAATTCTCG TCCGAGATCG TGGGCCAGTT CGACCCGCCC
GCCTTCGACG AGGGCTGTGT GGGGGCCGTG CGCAGCGCGG CGCAACGGTT GGGGTATTCG
CACATGGATA TCGTGTCGGG CGCGGGGCAT GACGCCTGCT GGATCAACGA CCTCTATCCC
ACGGCGATGG TGATGTGCCC CTGCGTGGAT GGGCTGAGCC ATAACGAGGC TGAAGAAATC
AGCCCCGAAT GGGCGGCGGC GGGTGCGAAT GTGCTGTTTC ACGCCGTTGT GGAAACCTCG
GAAATCGTGC GCTAG
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| Protein sequence | MPADTVTAPN APGENLKING DRLWDSLMEM ARIGPGVAGG NNRQTLTDAD AEGRALFRRW
CEEAGCTMGL DTMGNMFARR EGTDPDALPV YVGSHLDTQP TGGKYDGVLG VLGGLEIIRS
LNDLGIKTKH PIVVTNWTNE EGTRFAPAML ASGVFAGKHS QDWAYARVDA EGKRFGDELK
RIGYVGDEPV GDRKMHAFFE LHIEQGPILE AEGKEIGVVT HGQGLRWIEC TVTGKESHTG
STPMNMRRNA GRGLARITEL VHEIAMKNQP NAVGAIGHID VYPNSRNIIP GKVVFTVDMR
THLLDKLNAM VAEFDEKAPK LCEEIGVEFS SEIVGQFDPP AFDEGCVGAV RSAAQRLGYS
HMDIVSGAGH DACWINDLYP TAMVMCPCVD GLSHNEAEEI SPEWAAAGAN VLFHAVVETS
EIVR
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