| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1195 |
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| Symbol | |
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| ID | 5711963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1234239 |
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| End bp | 1235231 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641267106 |
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| Product | TRAP transporter solute receptor |
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| Protein accession | YP_001532538 |
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| Protein GI | 159043744 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.71869 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCA CCCTGATGAC CGGCACCGCC ATGGCCGTGG CCCTGAGCGC GACCGTGGTC
ACGACCGCCA CCGCCCAGGA CCGCGACGGC TGGCCCGACA GCTTTACCGT CGGCACCGCC
TCCCAGGGCG GCACCTATTT CGCCTATGGC TCCGGCTGGG CCAACCTGGT CGCCGAAGAG
CTGGGCCTGT CGGGCGGCGG CGAAGTGACC GGCGGACCGA TGCAGAACAT GGCGCTGGTG
CATACCGGCG ACGCCCAGTT CGGCATGACC ACCATGGGCC CGGCGGCCGA ATCGCTCGCC
GGTACCAACC CGATCGCGCC GGGGCTGCAG ATGGACAACG CCTGCGCGAT GTTCCCGATG
TACCAGACGC CGTTCTCGGT GACGGCCCTG TCCTCCTCGG GCATCGCCTC GATCGCGGAT
ATCCCCGACG GGGCCAAGAT CGGCTTCGGC CCGGCGGGCT CCACCTCCGA CACCTACTTC
CCGCGGATGA TGGAAGCCCT CGGCGTGAAT TTCGAGCGCC GTAACGGCGG CTGGTCCGAC
CTCGGCGGGC AGCTGCAGGA CGGCCTTCTG GACGTGATCG CCTTCGCCGC CGGCGTGCCG
GTCCCGGCGG TCAGCCAGCT CGAAGTGCAG ACCGACATCA ACATCATCGA GTTCACCGAA
GAGGAACAGG CCAAGATCAT GGCCGACTTC CCCGTCTCGG AATTCAGCAT CGGCGCGGGC
ACCTACTCGA CCCTGGAGGC GGACGCGCGC TCGGTCTCCA TGTGGAACTT CGCCATCGCC
AATTGCGACC TGCCCGCCTC CTTCGTGAAG GCGGCCACGG ATGTGGTGAT GTCCGACAAC
GCCCGCATGG TCGGCATCCA CAAGGCGGCC CGGTCGACCC TCCCCGAGAA CTGGGACAAG
AACAAGGTTC TCAAATGGCA CCCGGGTGCC GCAGAGTGGT TCAAGGAAAA CGCCGGGGCC
GACATCCCCG ACGACATGAT CCACGGCATG TAA
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| Protein sequence | MKFTLMTGTA MAVALSATVV TTATAQDRDG WPDSFTVGTA SQGGTYFAYG SGWANLVAEE
LGLSGGGEVT GGPMQNMALV HTGDAQFGMT TMGPAAESLA GTNPIAPGLQ MDNACAMFPM
YQTPFSVTAL SSSGIASIAD IPDGAKIGFG PAGSTSDTYF PRMMEALGVN FERRNGGWSD
LGGQLQDGLL DVIAFAAGVP VPAVSQLEVQ TDINIIEFTE EEQAKIMADF PVSEFSIGAG
TYSTLEADAR SVSMWNFAIA NCDLPASFVK AATDVVMSDN ARMVGIHKAA RSTLPENWDK
NKVLKWHPGA AEWFKENAGA DIPDDMIHGM
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