| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1171 |
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| Symbol | |
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| ID | 5711939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1201406 |
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| End bp | 1203928 |
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| Gene Length | 2523 bp |
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| Protein Length | 840 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641267082 |
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| Product | penicillin-binding protein |
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| Protein accession | YP_001532514 |
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| Protein GI | 159043720 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0742026 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.682279 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGCGTT TCGTTTTCGG GTTTTTCGGA GCCATCTTCT CGGCGGTGAC GCTGGGCCTC
TTCGCCGTGG CGCTGAGCAT CGGCGCGGTG CTTTGGATGT ATGGCCGCGA CCTGCCGGAC
ACCGAGGCGC TGGCGCAATA CGCGCCGCCC ACGATCTCCC GCGTCTATTC CGGCGAGGGT
GCGTTGATGG ACGAGTTCGC CCGCGAACGG CGCGTCTTCG CGCCCGCCGA CGAGATCCCG
GATCTGGTGA AACAGGCGTT CATCTCCGCG GAAGACAAGA ATTTCTACGT CCACAAGGGG
TACGACCCGC GCGGCATGGC CGCGGCGGCG CTGGACGCGG CAACGGGTGG GCCCTTGCGC
GGGGCGTCCA CCATCACCCA GCAGGTGATG AAGAACTTTC TTCTGGGCGG CGAGCGGTCG
GCCGAGCGCA AGATCAAGGA GTTGATCCTG TCGGCGCGGA TCGAGGAGAC GCTCAGCAAG
GACGACATCC TCGAACTCTA CATGAACGAG ATCTTTCTCG GACAGAACAG CTTCGGGGTC
GCCGCCGCAG CGCAGACCTA CTTCAACAAG ACCCTGGCGG AACTGGAGCC GCACGAGGCC
GCTTATCTCG CGGCCTTGCC CAAGGCGCCC TCGACCTATC ACCCGGTGCG CGCCATGGAC
CGCGCGGTGG AGCGGCGGAA TTTCGTGCTG CGCGAGATGT ACGAGAACGG CTACCTGACC
GAGGCGGCTT ACCAATCCGC CCGCGCCGAG CCCCTGCGCA CGGTTCAGAG CGGGGATTTC
CCGTCTTTCC GCCGCGCCCT GCCGCCCCGG GACTACTTCA CGGACGAGAT CCGCCGCCAG
CTTTCGGGTC GGTTCGGGGA AGAAGAGTTT TTCACCGGCG GGCTGTCGAT CCGGGCCACG
GTCGATCCGA CCCTGCAGAA AGAGGCTGCC CGTGCCTTGC AGGCCGGGCT GGAGCGTTAC
GACCGCTCCC GCGGGGTCTA TCGCGGCCCG GCGGAGCGGC TCGACCCGGC GCTGGTGGCG
GCCGACTGGG CCGCGGCGCT GGACGATCTG CGCGTGCCGC GGGACATCGA CGGATGGCGC
CCGGCGGTGG TGCTGGACTT CGGCCAGGGC GGCGCATTGC TGGGCGTGGA AGGCGTGGCC
GAAGGTGTGC CGCAGATCCT GCCGGATGCG GATGTGACCT GGGCGCGGCC GCGCCGCGCG
AACGGCAGTC TCGGCGCCCA GGCGCGCGAG GCCAGCGACC TTCTGGCCGT GGGCGACGTG
ATCCATGTGC GCGCCGAGGG CGAGAACACC TGGTCCCTGC GCCAGATCCC CGAGGTGCAG
GGCGGCTTCA TGGCGATGGA CGTCAATACC GGCCGCGTGC TGGCGATGCA GGGCGGGTTT
TCCTACCAGT CCTCGGTCTT CAACCGCGCG ACCCAGGCCA CGCGGCAGCC CGGCTCCAGC
TTCAAGCCGC TCGTCTACGC CGCGGCCCTG GACACTGGCT ACTCGCCGGC CACCATCGTG
ATCGACGCGC CGATCGCGGT CGACACCGGC GCGGGCGTCT GGCGGCCCAA GAACGCCTCG
AACCGGTTTT ACGGACCGAC GCCCCTGCGG ACCGGGATCG AACGTTCGCG CAACCTGATG
ACCGTGCGGC TGGCGCAAGA GGTCGGCATG GAAACCGTGG CTGACTATGC CGAAAGCTTC
GGGGTCTACG AGGATCTCGA ACCCTATCTC GCCAACGCGC TGGGCTCCCA GGAGACGACC
CTGTTCAACA TGGTCGCGGC CTACGCGATG TTCGCCAATG GCGGACAGCG GGTGGAGCCG
ACGCTGGTCG ACCGGGTGCA AGACCGCTGG GGCAAGACCG TCTATCGCCA CGACCAGCGC
ACCTGCCTGG ATTGCGAGGC CGAGGCGCTG GCCGAAGGCA CCGCGCCCCG GATCATGGCC
AACCGCCGCC AGGTGATCGA CCCGATCACC GCCTATCAGC TGACCTCGAT GATGCGCGGC
GTGGTCGAGC GGGGCACGGC GGCGCGGACC GTGAACCTGC CCGTGCCCAT CGCGGGCAAG
ACCGGGACGA CGAACGACGC CAAGGATGTG TGGTTCGTGG GCTTTTCGTC CAACATCGTG
GCGGGCTGCT ATATCGGGTA CGACCGGCCC CGGACCCTGG GGCGCGGCGC CTCTGGCGGC
GGAATGTGCG GCCCGGTGTT CAACCAGTTC ATGGAAACCG CGATCAAGAC CTACGGCGGC
GGCAGGTTCA CCGTGCCCGA GGGCGGCAGC TTCGTGAAGA TCGACCGGTT CTCGGGCGCA
CGGCTCGAAG ACGATGCCAC CGGGCCGACC GTTGTGGCGG AGTATTTTCG CAAGGGCGAA
GAGCCGTTTT ATGGTGCCGG TGCGATCCTC GACGGTGGCT TCGCCATGGG CGCGAACCTG
CCCATGTACA CGCCCGACGG GCAACAGGGC GGCTCGGAGG AGGTGGTGAC CTCCACCGGG
CGCACGGCGG TGGTGCCGAA GAAGGCCAAT GTCGGGACGG TGACGGCCGG CGGGCTTTAC
TGA
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| Protein sequence | MLRFVFGFFG AIFSAVTLGL FAVALSIGAV LWMYGRDLPD TEALAQYAPP TISRVYSGEG
ALMDEFARER RVFAPADEIP DLVKQAFISA EDKNFYVHKG YDPRGMAAAA LDAATGGPLR
GASTITQQVM KNFLLGGERS AERKIKELIL SARIEETLSK DDILELYMNE IFLGQNSFGV
AAAAQTYFNK TLAELEPHEA AYLAALPKAP STYHPVRAMD RAVERRNFVL REMYENGYLT
EAAYQSARAE PLRTVQSGDF PSFRRALPPR DYFTDEIRRQ LSGRFGEEEF FTGGLSIRAT
VDPTLQKEAA RALQAGLERY DRSRGVYRGP AERLDPALVA ADWAAALDDL RVPRDIDGWR
PAVVLDFGQG GALLGVEGVA EGVPQILPDA DVTWARPRRA NGSLGAQARE ASDLLAVGDV
IHVRAEGENT WSLRQIPEVQ GGFMAMDVNT GRVLAMQGGF SYQSSVFNRA TQATRQPGSS
FKPLVYAAAL DTGYSPATIV IDAPIAVDTG AGVWRPKNAS NRFYGPTPLR TGIERSRNLM
TVRLAQEVGM ETVADYAESF GVYEDLEPYL ANALGSQETT LFNMVAAYAM FANGGQRVEP
TLVDRVQDRW GKTVYRHDQR TCLDCEAEAL AEGTAPRIMA NRRQVIDPIT AYQLTSMMRG
VVERGTAART VNLPVPIAGK TGTTNDAKDV WFVGFSSNIV AGCYIGYDRP RTLGRGASGG
GMCGPVFNQF METAIKTYGG GRFTVPEGGS FVKIDRFSGA RLEDDATGPT VVAEYFRKGE
EPFYGAGAIL DGGFAMGANL PMYTPDGQQG GSEEVVTSTG RTAVVPKKAN VGTVTAGGLY
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