| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1163 |
|---|
| Symbol | |
|---|
| ID | 5711931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 1191786 |
|---|
| End bp | 1192937 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267074 |
|---|
| Product | efflux transporter |
|---|
| Protein accession | YP_001532506 |
|---|
| Protein GI | 159043712 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.707562 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTAC TCACCTCTCT CGTCACCGCG CTGGTGGTTG TTGCGGCGCT TTACGGGCTG
GTGTTCGAGC GCGAGCGCCT TCTGGAGTTT GCCGGGGTGA CGTCGACCCC CACCGATACC
CCCACCGCCG CGGCGGAGGC GCCCGAAGTG ACCCAGGCCG TCGCGCAGAC CGAGCCCGAG
ATCCGGCGGG TTTCCGTCGT TGCCATGGCC TCCGAAGCCC AGACCATCGA CAGTGCGGTG
ATCCTACGCG GTCGGACCGA ACCCCTGCGC CAGGTCGATG TGAGCGCCGA GGTGTCGGGC
AAGGTGATCT CCCCGCCCCT GCGTCGCGGC GCGCGGGTGG TCGCGGGCCA GACCCTGTGC
GAGCTGGACC CGGGCACCAT GAAAGTTTCC CTGGCCGAGG CGCAGGCCCG GCTCCTGGAG
GCCGAGGTGC TGGCGACCGC GGCCTCGGAG CTGGCCGATG GCGGGTTCGG CTCGGTCACG
CGCCGGGTGT CCGCCGAAGC AGCGCTCGAA GCCGCGCGCG CCAGCGTGGA GCGTGCCGAG
GATGCGATCG CCAACCTGGT AATCACCGCC CCGTTCGACG GGGTGCTGGA ACAGGACACG
GCGGAGCTGG GCGCCTATCT CTCGCCGGGC AGCCCGTCGG GGGCCCATTG CGCCACGATC
CTGCAGCTCG ACCCGATCAA GATCGTGGGC TTTGCCCCCG AAATGCTGGT CGACCGTATC
GCCGTGGGTG CCATGGCGGG CGCGCGGCTG GCCGATGGGC GCGACGTGTC GGGCCAGGTG
ACGTTCCTGT CACGCTCGGC GGACGAGACC ACGCGCACCT TCCGGGTCGA GGTGCAGGTG
CCCAATCCCG ATCTGAATAT CCGCGCGGGC CAGACCGCGC AGGTCGGCGT GACATCGGAC
GGGGCGGTCG CGCATCTGCT GCCGGCCTCG GCACTGACCC TGGACGATGC CGGACGGCTC
GGCGTGCGGC ATGTGGTCGA GACCGATGCC GGACCCGAAG CAGCCTTCGC CGAGGTGGAG
ATCGTGCGCG ACACCATCGA CGGCGTCTGG CTCAGCGGCC TGCCCCAGAC CGTGCGCGTC
ATCGTCGTCG GCCAGGATTT CGTGACGGCG GGCACGCCCC TGACCGTCAC CATGCGGGAG
CCTGACGTTT GA
|
|---|
| Protein sequence | MRLLTSLVTA LVVVAALYGL VFERERLLEF AGVTSTPTDT PTAAAEAPEV TQAVAQTEPE
IRRVSVVAMA SEAQTIDSAV ILRGRTEPLR QVDVSAEVSG KVISPPLRRG ARVVAGQTLC
ELDPGTMKVS LAEAQARLLE AEVLATAASE LADGGFGSVT RRVSAEAALE AARASVERAE
DAIANLVITA PFDGVLEQDT AELGAYLSPG SPSGAHCATI LQLDPIKIVG FAPEMLVDRI
AVGAMAGARL ADGRDVSGQV TFLSRSADET TRTFRVEVQV PNPDLNIRAG QTAQVGVTSD
GAVAHLLPAS ALTLDDAGRL GVRHVVETDA GPEAAFAEVE IVRDTIDGVW LSGLPQTVRV
IVVGQDFVTA GTPLTVTMRE PDV
|
|---|
| |