| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1124 |
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| Symbol | |
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| ID | 5711092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 1149478 |
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| End bp | 1150473 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641267035 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001532467 |
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| Protein GI | 159043673 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0315206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATCC TGGAGCAGTT GAACACCCTT CTTGTCGCTT ATCTCGGCCC GCTCGGTCCG
GTTCTGGCCG CCGGATTCCT TGGCGCGATG CTGATCTTGC TGACCTTGCC CTTTCTGCTC
CGCAAGGAGA AGGATCCGCT CCTGAAGATC AAGCAGGAGC GGCTGGGCAC CGCGAAGCGC
GCTGCCGAGG ATGGCAAGGG CAAGCAACTG CGCCAGGACG ATCCCGGCAA GAAGCTGGAG
CGGTTCTCGC AATACCTCGA GCCCCAAGAT AACGAAGAGC TGTCGGCGAT CCGGCTCAAG
CTGATCCAGG CCGGCTACCG ACAGAAATCC TCGGTCCAGA TCTTTCACTT CGCGCAACTG
GCGCTCGGCC TCGGGTTCCT GTCGATCGGG GTGATCTACA CCTTCTTTTT CGGCGGCGGT
GAAGACCCAG ACGTCACCAA GGCCACTCTG ACCACCCTGG TGCCGGGCTT TTGCGGCTAC
TACCTGCCGA AATACTGGGT CGACAAGCGG ATCGACAAGC GACAGGAGGA AATCACGAAC
GGTTTTCCCG ACAGCCTCGA CCTCATGCTC GTGTGCGTCG AAGCGGGACA GGGCCTGGAT
CAGGCCATCA TCCGCGTCGC CCATGAGATT CGCGCGGGCT ATCCCGACCT CGCCGATGAA
TTCGAGATGG TCGCCTTCGA GATCAAGGCT GGCAAGGACA AGATCACCGT GCTGAAGGAC
ATGGCCGAAC GTTGCGGCGT GGGGGACGTG ACCTCCTTCG TCACCGTTCT GATCCAGTCG
CAGTCCTTCG GCACCTCGAT CGCGGATGCC CTGCGGGTCT ATGCCGGGGA GATGCGTGAC
AAACGGGTCA TGCGCGCCGA GGAAAAAGCG AATGTTCTGC CAACCAAGCT GACACTCGGG
ACGATGATGT TTACGGTGCC GCCACTGCTG ATCATTCTGA TCGGGCCATC GATGTGGAGC
ATCTATGAAA GCCTGTCCCA ACGCGGCGGT CCCTGA
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| Protein sequence | MAILEQLNTL LVAYLGPLGP VLAAGFLGAM LILLTLPFLL RKEKDPLLKI KQERLGTAKR
AAEDGKGKQL RQDDPGKKLE RFSQYLEPQD NEELSAIRLK LIQAGYRQKS SVQIFHFAQL
ALGLGFLSIG VIYTFFFGGG EDPDVTKATL TTLVPGFCGY YLPKYWVDKR IDKRQEEITN
GFPDSLDLML VCVEAGQGLD QAIIRVAHEI RAGYPDLADE FEMVAFEIKA GKDKITVLKD
MAERCGVGDV TSFVTVLIQS QSFGTSIADA LRVYAGEMRD KRVMRAEEKA NVLPTKLTLG
TMMFTVPPLL IILIGPSMWS IYESLSQRGG P
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