| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1094 |
|---|
| Symbol | |
|---|
| ID | 5711062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 1121391 |
|---|
| End bp | 1122380 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641267005 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_001532437 |
|---|
| Protein GI | 159043643 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATGA CACATGGTTT TGCGCAGCAT GTCGAGAACG TGGTGGCCAC GGTGGCGATG
CCCTCTGCGG CGGCGCAGTC GCGGCTGGCC GCATCCTGGT GTCGGTCCTT CAAGACCTAC
CAGCTGCATC CGGGCTATCG CGGGCGTCCT GAGCGGCTGT CGGGCCGGGA TTTCAACCTG
CGCAAGGATG AGAACGACGC GCTGATCCAT GCGGCGGGCT CGGCGCTGGA TCACCTGTTC
AAGGTGTTGC GGATGTCGGG CTGCGCGGTG TTCCTGGCGG ACCGGGAGGG GTGCATCCTC
GACGGGCGGT CCGGCACCGG CGATGCGGAC GGGTTCGAGA GTTGCAACCT GAGCCCCGGC
GCCGATTGGA GCGAGGCCTC CGAGGGTACC AACGGGATCG GCACCTGCCT GAGCGAGGGC
CGCGCCGTGA CCATCGACCG AACCGATCAT TTCTCGGCCC GCAACATCGC CATGACCTGC
ATCGGAGCGC CGGTTTTCGG GGCCAGGGGC GAGTTGGTGG GCGCGGTGGA CGTGTCCTCG
GCCCGGGAGG ACCACACGCC GGGGCTGAAT GCGCTGATGG CCGAGACCGT GGCCCAGGCT
GCGCGCAATA TCGAGGCGGC GCTGTTCCGG CAGGCTCATC CGCGGGCGCG GATCGTGGTG
GCCGAGACCG ACGGCACGGG CCCGGTGGGG CTGCTGGCGA TCGACCAGGA CGATGTGATC
ACTGGCGCGA CACATGCCGC GCGCCGGTCC ATGGGCGTGG CGCGGGACAC CCCGTTCGCG
CCCATGCCCG CCGCCGATGT GTTGGGCCGT CCCGAGCCCC ATCGCGGCTT CGACCGGGCC
GAATATGCCG CCGTCAAACG CGCCCTGCTG CGGGCCGGCG GCAATGTCAG CGCGGCGGCC
CGCGACCTCG GGGTCGGGCG CGCGACCCTC TATCGGCGCA TGAAGCGGGT CGGTCTCGAC
GAAACCTGTC GCAACCTGTC TCAGAACTGA
|
|---|
| Protein sequence | MQMTHGFAQH VENVVATVAM PSAAAQSRLA ASWCRSFKTY QLHPGYRGRP ERLSGRDFNL
RKDENDALIH AAGSALDHLF KVLRMSGCAV FLADREGCIL DGRSGTGDAD GFESCNLSPG
ADWSEASEGT NGIGTCLSEG RAVTIDRTDH FSARNIAMTC IGAPVFGARG ELVGAVDVSS
AREDHTPGLN ALMAETVAQA ARNIEAALFR QAHPRARIVV AETDGTGPVG LLAIDQDDVI
TGATHAARRS MGVARDTPFA PMPAADVLGR PEPHRGFDRA EYAAVKRALL RAGGNVSAAA
RDLGVGRATL YRRMKRVGLD ETCRNLSQN
|
|---|
| |