| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1091 |
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| Symbol | |
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| ID | 5711059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1118562 |
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| End bp | 1119836 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267002 |
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| Product | TRAP dicarboxylate transporter |
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| Protein accession | YP_001532434 |
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| Protein GI | 159043640 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.1392 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.387464 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCA TCCTGATCCT TGTCGCGCTC TTTGTGCTGT TGCTGCTGGG CGTGCCGGTG
GCCTTCGCGC TGGGGGGCAT GGGGTTGGCG ATGCTGATCC TCGGGGGGTT CTCGCCCCTG
ATGGCGCCGC AATCCATCCT GTCCACGCTG GACGGGTTCA TCCTGTTGGC GGTGCCCCTG
TTCCTTCTGA TGTCCAACCT GCTGCTGAAG GGCGGGGTGG GGCGCGATCT GTTTGCGGCC
GTCCAGGCCT GGGTCGGGCA TTGGCCCGGC GGGCTGGCGG TGGCGACGAT CCTGAGCTGT
GCGCTGTTTG CGGCGATCTC GGGCTCGTCG GTGGCGACGG CGGCGACCAT CGGCACCGTG
GCGATCCCCG AGATGATCAA CCGCGGTTAC GAGAAGAAAT TCGTCTATGG CCTGCTGGCT
GCCGGGGGGA CGCTGGGCAT TCTGATCCCG CCCTCGATCC CGATGATCGT TTACGGCTTC
GTGACCGAGC AATCGGTGAT CGCCTTGTTC CTGGCCGGGA TCGGGCCGGG GCTGTTGCTG
GTCACGCTCT TCGTGCTGTT TGCCATGCTG CATGCGCGGC TGTCGGGGAC CTATACGCCC
GTGCCCAAGG CCACCATGGC GGAACGGATG AGCGCCTCGA AACGGGCGCT GCCCTCGGTG
GCGCTGGCCG CACTGGTCAT TGTCGGGCTT TACTCCGGGG CCTTCACGCC GACGGAGGCT
GCGGCCATCG GCTCGGCCGC GGCGCTGGCC ATCGTCACTC TGTGGCTGCG GACCCTGACC
TGGGTGACCT TCTGGGAGGC GGTGCGCGAA AGTGCGATCA CCACCGCCGC GATCCTGCTG
ATCGTCGCGG GGGCAAAGGT GTTCGGCAAG GCGATCGCGC TCTACCGTAT CCCGCAGGAT
ATCTCGGCTT TCCTGACCCA GGTGATCGAC GGGCCGATCA TGTTCATCGT GGTGGTGTCG
CTGGTGCTCT TGCTGATGGG GCTGGTCTTC GAGGCGTTGT CGATGATCCT GATCATGACG
CCGGTGCTGT TGCCGGCGGC GATGGGGCTG GGCTTCGATC CGATCTGGTT CGGCATCTAC
ATGGTGATCA TGGTGGAATG TGCCCTGATC ACGCCGCCTG TGGGCTTGAA CCTCTATGTG
ATACAATCGG TGGCGCGCAC GACCCTGTCC AATGTGGCGC GCGGGGTCTG GCCCTTCCTC
ATTCTGATGC TGGTGACGGT GGGGGTGCTC TATGCCTTCC CGCAACTGGC GCTGTATATT
CCTTTCCAAT GGTGA
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| Protein sequence | MTIILILVAL FVLLLLGVPV AFALGGMGLA MLILGGFSPL MAPQSILSTL DGFILLAVPL
FLLMSNLLLK GGVGRDLFAA VQAWVGHWPG GLAVATILSC ALFAAISGSS VATAATIGTV
AIPEMINRGY EKKFVYGLLA AGGTLGILIP PSIPMIVYGF VTEQSVIALF LAGIGPGLLL
VTLFVLFAML HARLSGTYTP VPKATMAERM SASKRALPSV ALAALVIVGL YSGAFTPTEA
AAIGSAAALA IVTLWLRTLT WVTFWEAVRE SAITTAAILL IVAGAKVFGK AIALYRIPQD
ISAFLTQVID GPIMFIVVVS LVLLLMGLVF EALSMILIMT PVLLPAAMGL GFDPIWFGIY
MVIMVECALI TPPVGLNLYV IQSVARTTLS NVARGVWPFL ILMLVTVGVL YAFPQLALYI
PFQW
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