| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1089 |
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| Symbol | |
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| ID | 5711057 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1117014 |
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| End bp | 1118006 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641267000 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_001532432 |
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| Protein GI | 159043638 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0631186 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.345342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCAGAG ACACTCTGAT ACTTGCGGCC TGCGCGTCCG TCATCGGCAG CGCGGCCCTT
GCCACCGAGA AGATGCGGAT TTCGCTGCAA TTGCCGCTGA CCAGCCATCT GGGCGAGAAC
CTGCAGCTTT TCGAGAAGGA GGTCGAAGAG CGCACAGGTG GTGCGATCGA CGTGGAAATC
TATGACAGCG CAACCCTTTA CCGCGACAAG GAAGTGCCCG CGGCCGTCGG CTCCGGCGCG
ATCGAGGCCG GGGTGGCATC GCTGACGCAG TATGTGGGCG ACGCGCCGGT GGTGGACGTG
TTCTACATGC CCTTCCTGTT CAACACCGAA GAGAAAGTGC GCGCGGCGGT GGCCGAAGGA
TCGCCCGTGC GCGAGATCCT AGAGACGGAG ATCGCCAAGA CCGGCGGCGA GGTTCTCTAT
TGGCAGGCCT ATGGCGGCGC AATCCTGCTC AGCCAGGATG AGCCGATCCG CACCCCCGAG
GACATGCAGG GCAAGAAGGC GCGGGTCTTC GGCAAGACGC TGGGCGATTT CGTGACCGCC
GCGGGCGGCG CGCCGACGCT GATCTCGGGT TCCGAGCAAT ACCTGGCCTA TCAGCGCGGC
ACGGTCGATG TGGGCATGAC CGGTGTATCG GGCGTGAAAT CCCGCAAGCT GTGGGAGGTG
ATGGACACCA TCACCAAGAC CAACCACGCC AATATCGAGT TCGTGGTGGT GGTCAACAGC
GACTGGTGGA ACGGACTGGA TGCCGAGACC CAGGGCCACA TCAACGCGGC CGCACAGGTG
GCACAGGATG ATGTGCGTGA CCGTATGGCC GCGATCGAAG CCGAAGCCTA CGCTGCCGCG
GAAGAGAACG GCATGACCAT CGTCGAGTTG ACCGACGAGG AGCTTGCCAA GTGGCAGGCC
GTGTCCCAGC CGGTCTATGA CAGCTATCTC GCGGCGACGG GTGAGGCGGG GCGACAGATC
CTCGACGCGC TCGGCGTGAA CTCCGGCTCC TGA
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| Protein sequence | MIRDTLILAA CASVIGSAAL ATEKMRISLQ LPLTSHLGEN LQLFEKEVEE RTGGAIDVEI
YDSATLYRDK EVPAAVGSGA IEAGVASLTQ YVGDAPVVDV FYMPFLFNTE EKVRAAVAEG
SPVREILETE IAKTGGEVLY WQAYGGAILL SQDEPIRTPE DMQGKKARVF GKTLGDFVTA
AGGAPTLISG SEQYLAYQRG TVDVGMTGVS GVKSRKLWEV MDTITKTNHA NIEFVVVVNS
DWWNGLDAET QGHINAAAQV AQDDVRDRMA AIEAEAYAAA EENGMTIVEL TDEELAKWQA
VSQPVYDSYL AATGEAGRQI LDALGVNSGS
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