| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_1087 |
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| Symbol | |
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| ID | 5711055 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1114171 |
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| End bp | 1115130 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641266998 |
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| Product | TRAP transporter solute receptor |
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| Protein accession | YP_001532430 |
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| Protein GI | 159043636 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.939177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.337295 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTTC TGAAACCCTT CGTGGTCGCG GCTGCCGTTG CAGCCTGCGC CATGGGCACC
GCCGCCGGGG CCGAGACCCG GATCACCTAT AAATCCGCCA AGGCGGGCTC GTCCTATTAC
CAGATGGCGG TGCAGATCTC CGAGGCGATG AAGGCGGGCA CCGATGGCGC GATCTCGGTC
ACGGTCGAGG AAAGCCAGGG CTCGGTGCAG AACGTGATGG AGGTGCGCGC GCGCGGCGGC
GACTACGTGT TCACCACCCC TCCCGCACTG ATCGGTCTGG CCCAGCGGGG GGCCGCCATG
TTCGAGGGCA AAGGGAGCCC GGCCTTCGAC GAGATCCGCG CATTGTTTCC GATCCCGTCC
CTGACCATGC ATTTCGTGAT GTCCGAGGCC AGTGGTGTCA CCAGCTTCGC CGAGATGGAG
GGCAAGACCA TCCTGCTCGG CAGCGGCTCG TTCGGGGCGC GCGAGGGCGA AAAATACCTC
GGCCTCTTCG GGCTGGAGGG CAAGGTCACC ATTGCCGATA GCGAGCTGTC CAACGCGGTC
AACGCGCTGA AAAACGGCCA GATCGACGGG TTCGTGACCG CGGGCTCCTA TCCGGCGCCA
AACGTGATCG AGGCGGCGGC CTCCACGGGG GTGACGGTGC TGTCGCTCAG CCCCGAGCAG
ATCGCGGAGA CCGGGCGCAC CGCCCTTACC ATCCCGGCGG GCACCTATGC CGGGCAGGAG
GCCGACATCG ACACCACGTC GCTTCCGGTG GTGGCCTACA CGACCACGAA GATGGACGAA
GAGACCGCCT ATCAGCTCAC CAAGACCTAT TGGGAGACCA AGGCCGACAT GGCGGGCGAT
GCCAAGTGGT GGGACGGGGT GTCGGTGGAC ATGCTGTCCA ACATCACCAC GCAGATCCAC
CCGGGGGCCC TGCGCTATTA CAAGGAAGTG GGCGCGACCC TCAGCGACGC GCATATGTAA
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| Protein sequence | MTFLKPFVVA AAVAACAMGT AAGAETRITY KSAKAGSSYY QMAVQISEAM KAGTDGAISV
TVEESQGSVQ NVMEVRARGG DYVFTTPPAL IGLAQRGAAM FEGKGSPAFD EIRALFPIPS
LTMHFVMSEA SGVTSFAEME GKTILLGSGS FGAREGEKYL GLFGLEGKVT IADSELSNAV
NALKNGQIDG FVTAGSYPAP NVIEAAASTG VTVLSLSPEQ IAETGRTALT IPAGTYAGQE
ADIDTTSLPV VAYTTTKMDE ETAYQLTKTY WETKADMAGD AKWWDGVSVD MLSNITTQIH
PGALRYYKEV GATLSDAHM
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