Gene Dshi_1000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_1000 
SymbolfadD4 
ID5710516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009952 
Strand
Start bp1032645 
End bp1034366 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content65% 
IMG OID641266911 
ProductAMP-dependent synthetase and ligase 
Protein accessionYP_001532343 
Protein GI159043549 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.00216584 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGATC CAACGCGGCC CTGGATGGCC TTCTATGGCC CGGACGTCCG GCCCGATATA 
GACACGCCCG CCTATCGCAC CCTGGGTGAC ATGATCGGGG CGGTGGCCGC GACCTATGGC
ACCGCGCCGG CCTTCACCAC TTGCCTGCCC AACGGGATGA ACGGCACCCT GAGCTTTGCC
CAGGTGGACG AGATGTCGGA TGCTTTCGCG GTGTACCTGC GCGAGGTCGC GGGCCTGAAC
CCCGGCGACC GGGTGGCGTT GCAGATGCCC AACTGCCTGA GCTTTCCCGT CGCGGCCTTC
GGGGTGTTCA AGGCGGGCTG CGTGCTGGTC AATGTCAACC CGCTCTATAC CGCCGAGGAG
ATGGGCAAGC AGTTCCTCGA TGCCGAACCC CATGCGCTGG TCATCGTGGA CATGTTCGCC
GACAAGATCC CCGAGGCGAC GCGCGGCCAC CCGATCCCGA ACATCGTGGT CACACGGATC
GCGGAATTTC TGCCCGCCCT GCCCCGGGGC ATCGTCGGGC TGGTCCAGAA ATACTGGGAC
CGCTCGGTCG CGGAGATCGA GGTGCCCCAT ATCCGGCTGC CCGACGCGCT GGAGGCTGGG
CGCCGTCACC AGGCGGACGA GCGGATCGAG GTGGAGGGCT ATCACCAGGC CGTCGCCCCG
GACGATGTCG CGGTTCTGCA GTATACGGGC GGGACCACGG GCGTGGCCAA GGGCGCGATG
CTGACCCATG CCAACCTGAT CGTGAACATG GAACAGACCA TGGAGCTGAT CGAGGGGCTG
GAGCGGGGCC GCGAGGTCGT TCTGACGGCG CTGCCGCTTT ATCATATCTT CGCGTTTTCC
CTCAACATGC TGGGGTTCTA CTGGATGGGG GCGCGCAATA TCCTGATCCC GTCGCCACGG
CCGCTGGCGA ACCTCAAGCG CGCCTTCGAG AACTACAGGA TCACCTGGAT GAGCGGGGTG
AATACGTTGT TCAACGGGCT GACCAACGAG ATCTGGTTCA CCGACACCCC GCCGAGGCAC
CTGAAATTCG CGGCCGCGGG CGGCATGGCG CTGCAATCCT CGGTCGCGGA GCGCTGGCGC
GAGATCACCG GGACGGATGT GCTGCAGGGT TACGGGTTGA CCGAAACCTC GCCGATCCTG
AGCCTGGAGC CTTTGGGCAA GACCCGGAGC GGATCCATCG GCATTCCCCT GCCCGCGACC
CGGCTGGCAT GTCTGGATGA CGACGGCAAG CAGGTCGCCA TCGGCGATCG CGGGGAGATC
GCGGCCAAGG GGCCGCAGGT GATGAAGGGC TACTGGAACA AGCCCGAGGA GACCGCAAAT
GTCCTGCAGA ACGGCTGGTT CCTCACGGGC GATATCGGGG TGATGGATGC GGATGGCTAT
TTCCACATCG TCGATCGCAA GAAGGACATG GTCGTGGTCT CGGGCTTCAA CGTCTATCCC
AACGAGGTGG AGGATTGCCT TGCCTCCCAT CCCGGCATCA TCGAGGCGGC GGTGATCGGG
GTGCCGGACG GGGCCACTGG CGAAGCGGTC AAGGCGTTCG TGGTCAAGGG TGATAGCGGG
CTGAGCGAGG CGGATATCCG CGCCCATTGC AAGGAGCACC TGACAGCCTA CAAGGTGCCG
AAACGGGTCG AATTCCGCGA CGAGCTGCCG AAGTCCAACG TGGGCAAGAT CCTGCGAAAG
GATCTGCGCG CCGAGGAACT TGCCCGCACG GGAGGGGCCT GA
 
Protein sequence
MEDPTRPWMA FYGPDVRPDI DTPAYRTLGD MIGAVAATYG TAPAFTTCLP NGMNGTLSFA 
QVDEMSDAFA VYLREVAGLN PGDRVALQMP NCLSFPVAAF GVFKAGCVLV NVNPLYTAEE
MGKQFLDAEP HALVIVDMFA DKIPEATRGH PIPNIVVTRI AEFLPALPRG IVGLVQKYWD
RSVAEIEVPH IRLPDALEAG RRHQADERIE VEGYHQAVAP DDVAVLQYTG GTTGVAKGAM
LTHANLIVNM EQTMELIEGL ERGREVVLTA LPLYHIFAFS LNMLGFYWMG ARNILIPSPR
PLANLKRAFE NYRITWMSGV NTLFNGLTNE IWFTDTPPRH LKFAAAGGMA LQSSVAERWR
EITGTDVLQG YGLTETSPIL SLEPLGKTRS GSIGIPLPAT RLACLDDDGK QVAIGDRGEI
AAKGPQVMKG YWNKPEETAN VLQNGWFLTG DIGVMDADGY FHIVDRKKDM VVVSGFNVYP
NEVEDCLASH PGIIEAAVIG VPDGATGEAV KAFVVKGDSG LSEADIRAHC KEHLTAYKVP
KRVEFRDELP KSNVGKILRK DLRAEELART GGA