| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0993 |
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| Symbol | |
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| ID | 5710509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 1022112 |
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| End bp | 1023083 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266904 |
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| Product | TRAP transporter solute receptor |
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| Protein accession | YP_001532336 |
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| Protein GI | 159043542 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.793659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGCCA TGAAGTTCTG GATCGCGGGC GCCGTTTCGG CCGCCGCCTT CGCCATGCCC
GCCGCCGCGC AGGAGCGGCT GGCATTCGGC GCCACCAATG CGCAATCCTC GCATTATGCC
TATTTCGCGG CGCTGGCGAA GATCGTGAAC AACGCCTATC CGGACAAGTA CCAGGCCAGC
GTCGTCGAGA CCGGAGCAAC GGTCGACAAC CTCAAGCGGA TGGACCGGGG CCAGCTCGAT
ATCGGCCTGA TCACCACCTC GGCGCTCTAT CATGCGAATG AGGGGATCAA GACCTTCGCC
GACGGCGCCA TCGAGTCGCG CCTGCTCTGG GCCTACAGCC TCGCGCCGCA GAACGTCATC
GTGCGCCGCG ATGCAGGCAT CGACAGTATC GCGGATCTCA AGGGCGTCCG TTTCGGCCCC
GGCCAGCGTG GCAGCTCCAC CGAAGCCACC TCGCAGGAAG TGCTGGCACT CTTCGGGGTG
GAGCCGGACT GGGTCCGCGG CTCCAATGGC GAGCTGGCCG CCGCGATCAA GGACAACCGC
GCCGTCGGCT TCATCAAGTC CGCCGTGGGC ACCAAGTTCG ACGCCCTGAC CACCGACATC
GCCACCTTCA CCCCGGTGCA GGTCCTGCCG GTTCCCGAGG ACAAGATCGC CATGATCCGC
GAGGAACTGC CCGAGCTGTC CATCGTCGAC ATGCCCGGCG GCGAGATGGA AAACACCGGC
GCCTACCAGA CCTGGGGCTT CATGATCGGC GTGTCCGCCC GGCCCGACAT GGACGAGCAG
ACCGCCTATG ACCTGGTCAA GGCCGTGATG GAGGACGACA CCGAGCAGGC CACCGCCTTC
CCGCCGGTCG CCGGGATCGA CCTGGCCGAG CAGACCCTCG CTTATGCCAC CTCGCCCCTG
CACCCCGGTG CCATCCGGTA CTTCGAAGAA GCCGGCTACG AGGTGCCCGA CCGCCTGCGC
CCCGGCAGCT GA
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| Protein sequence | MNAMKFWIAG AVSAAAFAMP AAAQERLAFG ATNAQSSHYA YFAALAKIVN NAYPDKYQAS
VVETGATVDN LKRMDRGQLD IGLITTSALY HANEGIKTFA DGAIESRLLW AYSLAPQNVI
VRRDAGIDSI ADLKGVRFGP GQRGSSTEAT SQEVLALFGV EPDWVRGSNG ELAAAIKDNR
AVGFIKSAVG TKFDALTTDI ATFTPVQVLP VPEDKIAMIR EELPELSIVD MPGGEMENTG
AYQTWGFMIG VSARPDMDEQ TAYDLVKAVM EDDTEQATAF PPVAGIDLAE QTLAYATSPL
HPGAIRYFEE AGYEVPDRLR PGS
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