| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0897 |
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| Symbol | |
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| ID | 5710587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 915495 |
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| End bp | 918620 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641266807 |
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| Product | virulence protein SrfB |
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| Protein accession | YP_001532243 |
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| Protein GI | 159043449 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4457] Uncharacterized protein conserved in bacteria, putative virulence factor |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.112933 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.362744 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCAAG ACCGCGCCAA GCGGCTGAGA CGGCTGGTAT CCTTGGGCGA CGAGATCACG
CTGGTGCCCT ATTCTGGCAT CCAGATCCTC GATTTCGGGT TCGATATCAA CGCGCTGGAT
ATCCGGTCCT TTCGTTTCAT CGAACGCCCC GAGGGCGCGG CCGAGGGCCG TCATCGCACG
CTCTATCCCC TGACCGGGGA GGCTGAGCGC GATGCGCCGA TCCTCGCGGC CACCACGCCG
GAGGATGACG AGTATTCCGT CCGGCCCCTC GCCGCACTGG AGCCGTTTCT GGAGAAATGG
GTGCCGATCC CGGTGCTGCG GTTGAAAAAC CAGCGCGGGG CAGGGGGCGA GGAGCTTTAC
GATCCCGGCC CGTCCTCCTG GGCGCGGCTG CGGACGGTGG AATTGCCCCA GCCCGATCCG
GAGACCGGCC ATACCCACCG GGTGCAGATC GCGCTCGACA CCGCGCTCAG CGACCAGGAC
CAGAGCGCCC ACTATGTCGC CCCCGAACGC GCCGACAGCG AGAAGCCGCG CGAGTTCCGG
CTGGTCTCTG ACCCCGGTGC GATGAGCTGG TTCCTGCAGC GGCTGGAGGC GGACGAGGAC
GGCAATGCGG TCGATCTGCA GCTCTGGGTG TCGGACTGGC TCAAGGAGAT GTTCCTCGAC
TTCAAACGGG CCGAACGCCC CGGGCGATCG ATCTCGGAAG AAAACCTGCC GCATATGTTC
GAGCATTGGG CGCGCTACCT GTCGTACCTT CAGGTGATTC AGCGCGCCGT GGCCCCGCCC
AAGATGCGCT TTGCCAACAC CGTCGCGCCG CGCGATGCGG TCGCCCCGGT CGAGGTCGAC
CTGGTGCTCG ACATCGGCAA CTCGCGGACC TGCGGCATTC TGATCGAGCG CTTCCCGGGC
GAGACGCGGG TCGACCTGAC CCGGTCCTTC CCGCTGGAGA TCCGCGACCT GTCTCGTCCG
GAGTTCCATT ATTCGGGCCT CTTCGAGAGC CGGGTGGAGT TCGCCGACCT GCGCTTCGGC
GACGAGCGCT ACGCGTCGCG GTCGGGTCGG CGCAACGCGT TCATGTGGCC CAGCTTCGTG
CGCATGGGGC CCGAAGCCGT GCGGCTCGTG CAGGCCGAGG AGGGGACAGA GACCCTGTCG
GGCCTGTCCT CGCCCAAGCG GTACCTTTGG GATGATGACG CGGTGTTGCA GGACTGGCGG
TTCCAGAACC ACCACGACCC CAACAACCTG CCGCGCCCGG TGCGCGCGGC CATGCGGCAC
CTGAACGAGG CGGGCGACGT GCTGGCCCAG GTCAAGACCG AGATCGGGCT CAACCTGCGC
AAGCCGAAAA AGACCACGCC GCTGACCCCG GCGATCCGGC CGCGGTTCTC ACGCTCCTCG
CTTTTCGGGT TCATGCTGGC CGAGGTCATT GCCCATGCCA TGGTGCAGAT CAACGATCCG
GCCTCGCGCT CGCGCCGGTC GCAGTCTGAC CTGCCGCGGC GGCTCAACCG CGTGATCCTG
TCCCTGCCCA CGGCGACCTC GGTGCAGGAA CAGGCGATGA TCCGGTCGCG GGTCTCGGGC
GCGCTGACCC TGGTCAAGGA GATGCTCGGC ACCAAGGACG GCACCAGCAC CATCGCGGTC
GAGGGCAAGC CCGAACTGCT GGTGGATTGG GACGAGGCGA GCTGCACCCA GCTGGTCTAT
CTTTATTCCG AGCTGACCCA GAAATTCGAT GGCCGGATCG ACACGTTTCT CGACCTCAAG
GGACAGCCAC GTCCGGACCC GGCAGGCGGC GAGAGCCCGT CCCTGCGGCT GGCCTGCATC
GACGTGGGCG GGGGGACCAC GGACCTGATG GTCACCACCT ATCGCGGCGA GGACAACCGG
GTGCTGCATC CCGAGCAGAC CTTCCGCGAA GGGTTCCGCG TGGCGGGCGA CGACCTGGTG
CACCGGGTGA TCAGCGCCAT CGTCTTGCCG CGGCTGCAGG ATTCCATCGC GCAGGCGGGC
GGGCAGTTCG TGGCCGAGCG GATGCGGGAG CTTTTCGGCG GCGATATCGG CGGGCAGGAA
CAGCAGACCG TGCAACGGCG AAGGCAGTTT TCCATCCGGG TGCTGGTGCC GCTGGCCGAG
GCGATCCTGT CGGCCTGCGA GGATGCCGAG GAGGCCGACC GCATCGACAT CCCCGTGGCG
GATGTGCTGG GCCTCGTGCC CACGCCGGTT GGCGAAGAAG GCGATGAGGA AGGCCACGAA
GACGCGTCGC CGCAGGTGAC CGACGAGATC CTCGACTATC TCGAAAAGCC CGCGACGCAG
CTGGGCGCCG AGGGCTGGCG GCTTGCGGAC ATGGTCCTGA GCGCCAGCCG CGAAGACCTC
GACGCCATCG CGCGGGAGGT GTTCCAGAAG GTGCTCGGCA ACATGTGCGA GGTGATCGAC
CATCTCGGCT GCGATGTGGT GTTGCTGACG GGCCGTCCCT CGCGGCTGCC GGCGGTGCGC
GCCATCGTCG AGGAAATGCT CGTGGTCCCG CCCCATCGCC TGATCTCGAT GCACCGCTAC
AAGACCGGCA ACTGGTACCC GTTCCGCGAT CCGGTCAGCC AGCGGGTGGG CGATCCGAAA
TCCACCGTGG CCGTGGGCGG GATGCTGATT GCACTGTCCG AGAACCGCAT CCCGAACTTC
AAGGTCACCA CCGGCGCGTT CCAGATGAAA TCCACCGCCC GTTTCGTGGG CGAGATGGAC
ACGAACGGCC AGATCCCCGA GGGGCGCATG CTGTTCGAGG ATCTCGATCT GGATGCCAGG
AAATCCGCGC AGGATCCCAC GGCGATCGTC CGCATGCACT CGCCGGTCTA TATCGGCGCG
CGCCAGTTGC CGCTGGAGCG CTGGACGACC ACGCCGCTCT ACCGGCTCGA CTTCGCGAAT
GACAGCATCG CGGGCAAGAT CAAGCTGCCG GTTAAGGTCG AACTGGTCCG CGAGGACGAT
GATTTCGACG AGGCCGAGAC CAGCCTGGAA AAACTGCGCG CCGAACGGGT GCGCGAGGTG
TTCCGGGTGG ATGCGGCCGA GGATGCCGAG GGCACGATGA TCAAGAACGA CGACGTGGTG
CTGTCGCTGC ACACGCTCGG GTTCGAGGAT GAATACTGGC TCGATACCGG CGTGTTCCGG
ATCTGA
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| Protein sequence | MLQDRAKRLR RLVSLGDEIT LVPYSGIQIL DFGFDINALD IRSFRFIERP EGAAEGRHRT
LYPLTGEAER DAPILAATTP EDDEYSVRPL AALEPFLEKW VPIPVLRLKN QRGAGGEELY
DPGPSSWARL RTVELPQPDP ETGHTHRVQI ALDTALSDQD QSAHYVAPER ADSEKPREFR
LVSDPGAMSW FLQRLEADED GNAVDLQLWV SDWLKEMFLD FKRAERPGRS ISEENLPHMF
EHWARYLSYL QVIQRAVAPP KMRFANTVAP RDAVAPVEVD LVLDIGNSRT CGILIERFPG
ETRVDLTRSF PLEIRDLSRP EFHYSGLFES RVEFADLRFG DERYASRSGR RNAFMWPSFV
RMGPEAVRLV QAEEGTETLS GLSSPKRYLW DDDAVLQDWR FQNHHDPNNL PRPVRAAMRH
LNEAGDVLAQ VKTEIGLNLR KPKKTTPLTP AIRPRFSRSS LFGFMLAEVI AHAMVQINDP
ASRSRRSQSD LPRRLNRVIL SLPTATSVQE QAMIRSRVSG ALTLVKEMLG TKDGTSTIAV
EGKPELLVDW DEASCTQLVY LYSELTQKFD GRIDTFLDLK GQPRPDPAGG ESPSLRLACI
DVGGGTTDLM VTTYRGEDNR VLHPEQTFRE GFRVAGDDLV HRVISAIVLP RLQDSIAQAG
GQFVAERMRE LFGGDIGGQE QQTVQRRRQF SIRVLVPLAE AILSACEDAE EADRIDIPVA
DVLGLVPTPV GEEGDEEGHE DASPQVTDEI LDYLEKPATQ LGAEGWRLAD MVLSASREDL
DAIAREVFQK VLGNMCEVID HLGCDVVLLT GRPSRLPAVR AIVEEMLVVP PHRLISMHRY
KTGNWYPFRD PVSQRVGDPK STVAVGGMLI ALSENRIPNF KVTTGAFQMK STARFVGEMD
TNGQIPEGRM LFEDLDLDAR KSAQDPTAIV RMHSPVYIGA RQLPLERWTT TPLYRLDFAN
DSIAGKIKLP VKVELVREDD DFDEAETSLE KLRAERVREV FRVDAAEDAE GTMIKNDDVV
LSLHTLGFED EYWLDTGVFR I
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