| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0850 |
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| Symbol | deaD |
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| ID | 5710539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | - |
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| Start bp | 859653 |
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| End bp | 861845 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 641266759 |
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| Product | DEAD/DEAH box helicase domain protein |
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| Protein accession | YP_001532196 |
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| Protein GI | 159043402 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00336665 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.272992 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTCCCC TGCCCGCGCC CATTGCCGCG GCGCTGGCCG ACAAGGGCTA CGATACCCTG
ACGCCAGTCC AGATTGCCGT CTCCGACCCG GCGCTGGTGG AGGCCGACCT GCTGGTCTCG
GCCCAGACCG GGTCGGGCAA GACCGTTGCC TTCGGGCTCG CCATCGCGCC TACGCTGCTG
GCCGACGCGG CCGCGTTCGG CCCCGCCGCG GCCCCCCTTG GCCTCGTCAT CGCGCCCACG
CGCGAGTTGG CCATGCAGGT CCGGCGGGAG CTTGAGTGGC TCTACGGCCC GGCGGGCGCC
CAGATCACCT CCTGCGTCGG CGGCATGGAT GCAAGGGACG AGCGGCGCGC CCTGGGCCGC
GGCGCCCACG TGGTCGTGGC CACCCCTGGT CGTCTGCGCG ACCATATCGA GCGCGGTAAT
ATCGACCTCG ACGCCGTGCG CGCCGTGGTG CTGGACGAAG CCGACGAGAT GCTGGACCTG
GGCTTCCGCG AGGACCTGGA ATTCATCCTC GGCGCAGCCC CGTCGGAGCG GCGCACCTTG
ATGTTCTCCG CCACGGTGCC GCCCGCGATT GCCAGCCTCG CCCAGCTCTA CCAGAAGGAC
GCGCGCCGGA TCAGCACCCG TGCCGAGACC CGGCAGCATG CGGACATCGC CTACCGCGCC
ATGGTGGTCG GGCCACGCGA CGAGGAAAAC GCGATCATCA ACGTGTTGCG CTACTATGAG
GCGGCGAATG CCATCGTGTT CTGCAACACC CGCGCCATGG TGAATCGGCT GACCACCCGG
TTCTCCAACC GCGGGTTCCA GGTCGTGGCG CTCTCGGGCG AGCTGACCCA GTCCGAGCGC
ACCCATGCCC TGCAGGCGAT GCGGGACGGG CGCGCGCAGG TCTGCGTGGC CACAGATGTG
GCCGCCCGCG GGATCGACCT GCCCAATCTC GAACTCGTCG TCCATGCGGA ACTGCCCAGC
AGTTCCGACA CCCTGTTGCA CCGCTCGGGC CGCACGGGCC GGGCCGGGCG CAAGGGCGTC
AGCGCGGTGA TCGTGCCGGT GAAATTCCGC AAGAAGGCCG AGAGGCTGCT GAAATGGGCC
AAGGTCACTC CCGACTGGGT CAGCCCGCCC AGCGCCGAGG ATGTCCGCGC CCAGGATGCC
GCCCGCCTGC TGGAGGATCC CGCTTGGGAG ACCCCCGTGG CCGAGGGCGA GGCCGAGATG
GTCGCGCGCC TGGTGGAGGC GTTCAGCCCG GAGCAGCTGG CCGCAGCCGT CCTGCGCGCC
GGATCCGCCC AACGCTCCGC CCCCGAGGAA ATTAGCGCGG GCGACATGAC CCCCACGCCG
CGCGTGCCCT TCGGGCCGAG TGCGTGGTTC ACCCTGTCGG TGGGCCGCGC CAGCCGCGCG
GAGCCGCGCT GGATCCTGCC GATGCTCTGC CGGGTGGGCG GTTTCGACCG TGACGAGATC
GGCGCGATCC GCATCCAGCA GGATGAGACC TTCGTCGAGA TCAAGGAGGC CGCGGTCCCC
GACACCCTGC AGGGGTCGGA GGCCTCGATC ACGCTGGAGG ATGGCGCGGT GCTCAGCCGT
CTCGCCGAGG CGCCCGACCT GTCGCAACGG GATGGCTCCG GCCCCGCGCG CAAGCCCCGG
GAGGGGCGCG GCCCGGTGTC CAGCACCCGG CCTTCGGCGG CGGGACGCAA ACCCCGCGCC
CCGCGCCCGG CCCCCGAGGC CACGCGCCCC GAACCGGCCC CCGCGCCCGC CTCGAGCCAG
GCCAACGACG CCCCCCCGGC GCGCAAGCCG CGTCACAAGG ACAAGCCGCC CGCGTCGAAA
GGCGCGACAC CCGACGGCCC GAAACCGCCA AAGGCCAAGC CCAGATCCGC CGACCGGGAC
CGGCCCAAGG ATCGCGCGCC CTACAGCCCC AAGGGCGGCA AGGCGGGTGG GCCGCGCGAC
GACAAGGGCA AACCGCGCGT CAAGGATCGC AAGCCCCCGC GTCCGGACGC AGCCGCCGCG
GTCGAGGAGG TCGCCCCGCG CCGGTCCAAC GCCGCGAGCG ACCCGTCCCA GCGGCTCGGG
CCCGATGGCA AGCCCCTGCG CGCACGCGGC AAGGGCGCCG CGAAGCCGGC CGGCAAACCG
GGCGCGAAAC CTGGCGGCAA GCCCGGCCGG CGCAAGACCT TCGCCAGCAA GGGCCCGGAC
GCCACGCCCC GGTGGAAAAA GCCCAAGCGC TAA
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| Protein sequence | MPPLPAPIAA ALADKGYDTL TPVQIAVSDP ALVEADLLVS AQTGSGKTVA FGLAIAPTLL
ADAAAFGPAA APLGLVIAPT RELAMQVRRE LEWLYGPAGA QITSCVGGMD ARDERRALGR
GAHVVVATPG RLRDHIERGN IDLDAVRAVV LDEADEMLDL GFREDLEFIL GAAPSERRTL
MFSATVPPAI ASLAQLYQKD ARRISTRAET RQHADIAYRA MVVGPRDEEN AIINVLRYYE
AANAIVFCNT RAMVNRLTTR FSNRGFQVVA LSGELTQSER THALQAMRDG RAQVCVATDV
AARGIDLPNL ELVVHAELPS SSDTLLHRSG RTGRAGRKGV SAVIVPVKFR KKAERLLKWA
KVTPDWVSPP SAEDVRAQDA ARLLEDPAWE TPVAEGEAEM VARLVEAFSP EQLAAAVLRA
GSAQRSAPEE ISAGDMTPTP RVPFGPSAWF TLSVGRASRA EPRWILPMLC RVGGFDRDEI
GAIRIQQDET FVEIKEAAVP DTLQGSEASI TLEDGAVLSR LAEAPDLSQR DGSGPARKPR
EGRGPVSSTR PSAAGRKPRA PRPAPEATRP EPAPAPASSQ ANDAPPARKP RHKDKPPASK
GATPDGPKPP KAKPRSADRD RPKDRAPYSP KGGKAGGPRD DKGKPRVKDR KPPRPDAAAA
VEEVAPRRSN AASDPSQRLG PDGKPLRARG KGAAKPAGKP GAKPGGKPGR RKTFASKGPD
ATPRWKKPKR
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