| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0831 |
|---|
| Symbol | upp |
|---|
| ID | 5711457 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 839244 |
|---|
| End bp | 839876 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641266740 |
|---|
| Product | uracil phosphoribosyltransferase |
|---|
| Protein accession | YP_001532177 |
|---|
| Protein GI | 159043383 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0035] Uracil phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01091] uracil phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.155687 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAGC ACTGCACCAT CGTCGATCAC CCCCTCGTGC AGCACAAGCT GACCTTGATG
CGCGACAAGG GAACCTCCAC CTCGGAGTTT CGGCGGCTGT TGCAGGAAAT CGCGCTGCTG
CTGGCCTATG AGGTGACGCG GGACCTGCCG CTCGGGACCG CGCGGATCGA GACCCCGCTG
GAGCCGATGG ACGCGCCGAA GCTGGAGGGC AAGAAGCTGG CGCTGATCTC GATCCTGCGG
GCGGGCAACG GGCTGCTGGA CGGGGTGTTG CAGCTGATCC CGTCGGCGCG GGTCGGGTTT
GTCGGGCTCT ACCGGGACGA AGAGACGCTG GAGCCGGTGG AGTATTACTT CAAGGTGCCG
GAAAACCTTG AAGAGCGGAT GGTGATCGCG GTGGATCCTA TGCTGGCCAC GGGCAACTCG
TCCGCGGCGG CCATCGACAT GCTGAAGAAG GCGGGCGCGA AGGACATCCG GTTTCTGTGC
CTGCTGGCCG CGCCCGAAGG GGTCAAGCGG ATGAAGGAGG CGCATCCGGA CGTGCCGATC
GTAACGGCGG CGGTGGACAG TCACCTCAAC GAGAAGGGCT ATATCGTGCC CGGTCTCGGG
GATGCGGGCG ACCGTCTGTT CGGCACCAAG TAG
|
|---|
| Protein sequence | MTEHCTIVDH PLVQHKLTLM RDKGTSTSEF RRLLQEIALL LAYEVTRDLP LGTARIETPL
EPMDAPKLEG KKLALISILR AGNGLLDGVL QLIPSARVGF VGLYRDEETL EPVEYYFKVP
ENLEERMVIA VDPMLATGNS SAAAIDMLKK AGAKDIRFLC LLAAPEGVKR MKEAHPDVPI
VTAAVDSHLN EKGYIVPGLG DAGDRLFGTK
|
|---|
| |