Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_0823 |
Symbol | |
ID | 5711449 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009952 |
Strand | - |
Start bp | 827784 |
End bp | 829175 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641266732 |
Product | two component, sigma54 specific, transcriptional regulator |
Protein accession | YP_001532169 |
Protein GI | 159043375 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.34957 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCGC CGCCTATCCT GCTGATCGAA GACACGCCGT CGCTTCAGCT TGTCTATGAC GCGATTATCC GGGGGGCCGG GCATGCCGTG ATTTGCGCTG ACACGGCCGA TGCCGGGCTG ACCGGGTTCA AGACCCACAA GCCCCGTGTC GTCGTGCTCG ACCTGATGCT GCCGGACCGG GACGGGCTGG AGCTGATGCG CGAATGCCTC GCACTCAATC CCGACGCGCG TTTCGTGGTG ATCACGGCCA ATGGCTCGAT CAACCGCGCG GTGGAGGCGA TGCGCGGCGG GGCCTATGAA TTCCTGGTCA AACCCTTCGA CGAGGGCCGT TTCCTCGCCG CGATCGACAA CGCCCTGCGC GACCATGTCC GCCCGCCCGA GGAAACGCCC GAGGTCCTGA ACGACTTCCG CGGCTTCATC GGCAGTTCGG ACACAATGCA GGACGTCTAT CGCCGCATCC AGTCGGTCAG CCGGTCCATG GCCACGGTGT TCATCACCGG CGAGAGCGGC ACCGGCAAGG AGGTCTGCGC GCAGGCGGTC CATGACAGCT CGACCCGGGC GGGCAAGCCC TTTGTGCCGC TCAATTGCGG GGCGATCCCG TCGGATTTGC TGGAATCCGA GGTGTTCGGC CATTTGCGCG GGTCCTTCAC CGGTGCCATC GCCGACAAGA TCGGCGCGGC GGCGGCGGCC GATGGCGGCA CGCTGTTTCT CGACGAGATC TGCGAGATGG ACCTGAACCT GCAGACCAAG CTGCTGCGGT TCCTGCAGAC CTCGACGATC CAGCCCGTGG GCGCGACAAG GGCGCGCAAG ATCAACGTGC GGATCATCTG CGCCACCAAC CGCAACCCGC TGGAAGAGGT CCGCAGGGGC CGGTTCCGCG AGGATCTGTA TTACCGCTTG CAAGTGGTGC CCATCCACCT GCCCCCCTTG CGCGAACGGG GCGAGGATGT GATCGCCATC GCCCGCGACG CGGTCCGCAA GTTCGCCGCG GAGGAAGGGC GCCGGTTCAC CGGGCTCGCC CCGGAGGTCG AGGCCCTGTT CCGCACCCTG CCCTGGCCCG GCAATGTGCG CCAGGTGATC AACGTGATGC GCAATGTCGT GGTGCTGAAT GACGGCCCGC TGGTGACCCA GACCATGCTG CCGCTGGAGA TCCTGCACCA CCACGAGGCG ATGACCAACA ATGCCGGGCC GGTCGGCCTG CCGCCCGAGA AGCCGGTCGT GTCGCTCGAT GGGTTGATGG GCCGGACCAT GGCCGAGATC GAGCGCATGG TGATCGAAGA GACCATCGCG CGCCATGGCG GGTCCGTGCC CAAGGCCGCG CGGGTGCTCG ACCTGTCGCC CTCGACGATC TATCGCAAGC GCGAGGCCTG GATGAAGGAC GCCGCCGAGT AG
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Protein sequence | MSAPPILLIE DTPSLQLVYD AIIRGAGHAV ICADTADAGL TGFKTHKPRV VVLDLMLPDR DGLELMRECL ALNPDARFVV ITANGSINRA VEAMRGGAYE FLVKPFDEGR FLAAIDNALR DHVRPPEETP EVLNDFRGFI GSSDTMQDVY RRIQSVSRSM ATVFITGESG TGKEVCAQAV HDSSTRAGKP FVPLNCGAIP SDLLESEVFG HLRGSFTGAI ADKIGAAAAA DGGTLFLDEI CEMDLNLQTK LLRFLQTSTI QPVGATRARK INVRIICATN RNPLEEVRRG RFREDLYYRL QVVPIHLPPL RERGEDVIAI ARDAVRKFAA EEGRRFTGLA PEVEALFRTL PWPGNVRQVI NVMRNVVVLN DGPLVTQTML PLEILHHHEA MTNNAGPVGL PPEKPVVSLD GLMGRTMAEI ERMVIEETIA RHGGSVPKAA RVLDLSPSTI YRKREAWMKD AAE
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