| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0804 |
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| Symbol | |
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| ID | 5711240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 810647 |
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| End bp | 812269 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 641266713 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001532150 |
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| Protein GI | 159043356 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.271201 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGG ACTATGTGGT CATCGGTGCC GGCTCCGCCG GCTGTGTCGT CGCCAATCGC
CTCAGCACGG ATGCGCGCAA CAAGGTCGTC CTCCTGGAGG CGGGCCCGCC CGACACGAAC
CCCTGGATCC ACATCCCCGT CGGCTATTTC AAGACCATGC ACAATCCGAC CGTGGACTGG
TGCTACAAGA CCCAGGCCGA CCCGGGCCTC AACGGGCGCT CCATCGACTG GCCGCGCGGC
AAGGTGCTGG GGGGCTCGTC CTCGCTCAAC GGGCTGCTCT ACGTGCGCGG CCAGCCCGAG
GATTACGACC GCTGGCGCCA GATGGGCAAT GCGGGCTGGG GCTGGGACGA TGTGCTGCCG
CTCTTCCGGC GGGCCGAGGC GAACGAGCGC GGCGCCGATC CCTGGCACGG CGATGACGGC
CCGCTGGCGG TCTCGAACAT GCGCATCCAG CGCCCGATCT GCGATGCCTG GGTCGCCGCG
GCGCAAGCCA TGGGCTACCC GTTCAACCCC GACTACAACG GCGCCAGCCA GGAGGGGGTG
GGCTATTTCC AGCTCACCAC CCGCAACGGC CGCCGCTGCA GCGCCGCGGT CGCCTACCTC
AAACCCGCCA GGAAACGCCC GAACCTGAGC ATCATCACCC GCGCGCTCGT CACCCGGATC
GAGATGGAGG GCAAGCGCGT CACCGGTGTG ACCTATACCG ACGCGGGCGG GCGCGCCCAC
ACCGTCAGCG CCCGGCGCGA GGTGATCCTG TCCGGCGGTG CGATCAACTC GCCCCATATC
CTGATGCTGT CGGGCATCGG CGACCCCGAC CAGCTCCAGG CCCATGGCAT CACGCCGCGC
CACGCGCTCC CCGGTGTCGG CAAGAACCTG CAGGACCACC TGCAGGCGCG TCTGGTGTTC
AAATGCAACG AGCCGACCCT GAACGATGAG GTCCGCAGCC TCGTCAATCA GGCGCGCATC
GCCCTGAAAT ACGCGCTTTT CCGCGCGGGG CCAATGACCA TGGCCGCCAG CCTCGCCACG
GGCTTTCTGA AAACCCGGCC CGACATCGCC ACGCCGGACA TCCAGTTCCA CGTCCAGCCC
TGGTCCGCCG ACAGCCCCGG CGAAGGCGTG CACCCGTTCT CGGCCTTCAC CATGTCCGTG
TGCCAGCTGC GCCCCGAAAG CCGCGGCGAG ATCCGCCTCG CCGGGCCGGA CCCGCGCACC
TATCCCACGA TCCACCCCAA CTACCTGTCG ACCGAAACCG ACTGCGCCAC CCTCACCGAA
GGCGTCAAGA TCGCGCGCCG GATCGCGCGG GCCGACCCTC TGGCGGGCAA GATCGCCGAG
GAATTCCGCC CCCCCGCCAA TCTCGCGCTC GACGACGATG CGGCCACGCT GGATTGGGCG
CGGAGCAACT CGGTCTCGAT CTACCACCCC ACGGGCACCT GCAAGATGGG CACCGGCCCC
GGCGCCGTGG TGGACGCCCG GCTGCGGGTC CACGGGCTGT CGGGCCTGCG CGTGGCGGAT
TGCTCGATCA TGCCCGAGAT CGTCTCGGGC AACACCAACG CCCCGGCCAT CATGATCGGC
GAGAAGCTCT CCGACATGGT GCTCGAAGAC GCCAGGGACA CCGCCCAAGC GGTCCCGGCC
TGA
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| Protein sequence | MEADYVVIGA GSAGCVVANR LSTDARNKVV LLEAGPPDTN PWIHIPVGYF KTMHNPTVDW
CYKTQADPGL NGRSIDWPRG KVLGGSSSLN GLLYVRGQPE DYDRWRQMGN AGWGWDDVLP
LFRRAEANER GADPWHGDDG PLAVSNMRIQ RPICDAWVAA AQAMGYPFNP DYNGASQEGV
GYFQLTTRNG RRCSAAVAYL KPARKRPNLS IITRALVTRI EMEGKRVTGV TYTDAGGRAH
TVSARREVIL SGGAINSPHI LMLSGIGDPD QLQAHGITPR HALPGVGKNL QDHLQARLVF
KCNEPTLNDE VRSLVNQARI ALKYALFRAG PMTMAASLAT GFLKTRPDIA TPDIQFHVQP
WSADSPGEGV HPFSAFTMSV CQLRPESRGE IRLAGPDPRT YPTIHPNYLS TETDCATLTE
GVKIARRIAR ADPLAGKIAE EFRPPANLAL DDDAATLDWA RSNSVSIYHP TGTCKMGTGP
GAVVDARLRV HGLSGLRVAD CSIMPEIVSG NTNAPAIMIG EKLSDMVLED ARDTAQAVPA
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