| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0783 |
|---|
| Symbol | |
|---|
| ID | 5711219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | + |
|---|
| Start bp | 787616 |
|---|
| End bp | 790579 |
|---|
| Gene Length | 2964 bp |
|---|
| Protein Length | 987 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641266692 |
|---|
| Product | helicase domain protein |
|---|
| Protein accession | YP_001532129 |
|---|
| Protein GI | 159043335 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4581] Superfamily II RNA helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000205991 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0820229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACACG ACGCGCGGAT CACCGCGGTC CTCGGTCCGA CCAATACCGG CAAGACCCAT
TACGCCATAG ATCGGATGCT GGGCTACCGG ACGGGCGTGA TCGGGTTGCC CCTGCGGCTG
CTCGCGCGGG AGGTCTATGA CAAGATCGTC GCCCTGCGCG GCCCGTCCGT GGTGGCCCTG
GTGACCGGCG AGGAACGGAT CGTGCCGGAC CGGGTGCAAT ACTGGGTCTG CACGGTCGAG
GCGATGCCGC AGGAGATTGG CGCCGATTTC CTCGCGGTGG ACGAGATCCA GCTTTGTGCC
GATCCCGAGC GGGGCCATGT GTTCACCGAC CGCCTGCTCA GGGCACGCGG TCTGCAGGAG
ACGCTGTTTC TGGGGGCCGA GACCATGCGC GGGGCGATTT CCGCGCTGGT GCCCAAGGCG
CAGTTCCTGC GCCGGGAGCG GTTTTCCGAG CTGACCTATA CCGGGGCCAA GAAGATCAGC
CGGATGAAGC CGCGCTCGGC CATCGTCGGG TTCTCGGTCG ACAATGTCTA TGCCATGGCG
GAGCTGATCC GGCGGCAGAA GGGCGGTTGT GCCGTGGTGA TGGGCGCGCT CAGCCCGCGC
ACCCGCAACG CCCAGGTGGA CCTTTATCAG AACGGCGATG TGGATTACCT GGTGGCGACG
GACGCCATCG GGATGGGGCT GAACCTGGAC GTGGCCCATG TCGCCTTCTC CAGCCTGTCG
AAATTCGACG GTCGCCGGAT GCGGGCGCTG GCGCCCAACG AGCTGGCCCA GATCGCCGGG
CGCGCGGGGC GCTACATGAC GCCCGGCACC TTCGGGGTGA CCGGCGAGGC GCCCGAAATC
ACGCCGGAGG TGGTCGCGGC CATCGAGGCC TCGCGGTTTA CCCCGATTCG CAAGCTGCAA
TGGCGCAGCG CCCGGCTCGA CTTCACCGGG CCCGGGCGGC TCATCGCCTC GCTGGAGGCC
GCGCCAGAGG ACGAGTGGCT CGCCCGATCC CGGGAATCGG ACGATCTGGC CGCGCTCAAG
ACCCTGGCGG CAGAGGCCGA GGTCGCCGCG CGCCTGTCGG ATGCGCGCGA TCTGCGGCTT
TTGTGGGATG TTTGCCGAAT CCCCGACTTC CGCGGCATCT CGGCGGGCGA ACACGCGGGC
ATGCTGACGC GGATTTTCGG CTTCCTGCAT GACGAGGGCC GCGTGCCCGA GCCGTGGTTT
GCGCGACAAG TCGCCCGTAT CGACCGGACA GATGGCGACA TTGACACATT GTCGAAACGC
TTGGCGTATA TTCGCACGTG GACCTATGTC GCCCAACGCA AGGGGTGGGT CGAACAGGAT
AGCCATTGGC GCGGCGAAAC CCGCGCTGTA GAAGACCGCT TGTCAGATGC CCTGCACACG
GCACTGACCC AGAGATTTGT CGACCGCCGC ACATCTGTGC TCCTGCGGCG GTTGAAGCAG
AAGGAGAGCC TGGTGGCTGA CGTAAACGAC AAGGGTGAAG TAACCGTTGA GGGCGAGCTG
ATCGGCCGTC TCGAGGGGTT CCGCTTCCGC CAGGACAAGA CTGCGACGCC GGAGGAGGCC
AAGACCGTGC GCGCCGCCGC TGTGGCCGCG CTCGCGCCGG AGTTTCATCT GCGCGCCGAC
CGCTTCTACA ACGCGCCGGA GACCGAGATC GACTATACCG AGCAGGGTGG TCTGATGTGG
GGCGAGCATG CGGTGGGCAA GCTCGTCAAG GGCGCCGACC CGCTCAAGCC CATGGTGCAG
GCCTTCGTCG ATGACGAGGC CGGGCCCGAG GTCGCCCAGA AGGTCGAGCG CCGCTTGCAG
CATTTCATCG ACCGCAAGAT CGCCGCCCTG TTCGAGCCGC TCATGGCCAT GAGCCGGGAC
GAGGCGCTGA CCGGGCTAGT GCGCGGATTC GCCTTCCAGT TGGTCGAGGC GCTGGGCGTG
CTGCCGCGCG GGACCGTGGC CAATGACGTC AAATCGCTGG ACCAGGATGC CCGCGCGCTC
CTGCGCAAGC ACGGGGTGCG GTTCGGGCAG TTCACGATCT TCCTGCCCCT GTTGCTGAAG
CCCGCGCCGA CCCGGTTGCG GCTGGTCCTG TCGTCGCTGG CCAAGGAGCG CGACGTGTTC
CCCGAAAGCC CGCCGCCGGG CCTCGTGACG ATTCCGACGG TCGAGGGGGT CGCGCAGGAG
ATCTACACCG AATCCGGGTA TCGGGCCGCC GGGGCGCGGG CGATCCGCAT CGACATGCTG
GAGCGTCTGG CCGACATGCT GCGCAGCGTC GATACCCGTG GCGGGTTCGA GGCAACGCCG
GACATGCTCT CGATCACGGG TATGACGTTG GAACAGTTCG CCGACCTGAT GCAGGGGCTG
GGCTATGCCG CCGAGAAGGG CGAGCGGCCC AAGGTGAAGC CCGCGCCGGT CGCGGCTGCG
CCGGCAGAGG TGGCGGAGAC GCCGGAGGGT GAGCCGTCCG ACGTGCCGTC AGAGACGCCC
AACGAGACCC CCTCGGAAAC CCCGCCGGAA GCGCCAAGGG AAATGCCCGT CGAAGTTCCG
CAGGAGGCCC CGGCAGAAGC ACCGCCCGAG GCCCCGACGG AAGACCCTGT CGAGGCCCCG
ACCGAGACCC CCGAGACGCC GCCCGCGGAA ATACCCGACG CGACGGCGGA GCCTTCAGAG
CCCGGCGCTG CCGAGGCCGT CAGCGACGTG GTTGCCGAGA AGGCCGAGCC GGAGGTGGAG
GTGTTCTACA CCTTCCGTTG GTCCCCCCGA CCGCGCCGCG GCGAGGCCCG AGGGCGCCGC
CAGGGTGCCG AGAGCGGCGG GCGGCCCAAT GCCAAGACCG GCGGCAAGCC CGGTGGCAAG
CCGAGGGGCA AGGGCAAGCC CGGCGGGCGC CCCGCGCGCG AGACCGGGCC CAAGACCTAC
CAGTCCCGGC CCGAGCGCAA GGACAAGATC GACCCGGACA ACCCCTTTGC CGCAGCCCTC
ATGGGGCTCA AGGACAAGTC CTGA
|
|---|
| Protein sequence | MRHDARITAV LGPTNTGKTH YAIDRMLGYR TGVIGLPLRL LAREVYDKIV ALRGPSVVAL
VTGEERIVPD RVQYWVCTVE AMPQEIGADF LAVDEIQLCA DPERGHVFTD RLLRARGLQE
TLFLGAETMR GAISALVPKA QFLRRERFSE LTYTGAKKIS RMKPRSAIVG FSVDNVYAMA
ELIRRQKGGC AVVMGALSPR TRNAQVDLYQ NGDVDYLVAT DAIGMGLNLD VAHVAFSSLS
KFDGRRMRAL APNELAQIAG RAGRYMTPGT FGVTGEAPEI TPEVVAAIEA SRFTPIRKLQ
WRSARLDFTG PGRLIASLEA APEDEWLARS RESDDLAALK TLAAEAEVAA RLSDARDLRL
LWDVCRIPDF RGISAGEHAG MLTRIFGFLH DEGRVPEPWF ARQVARIDRT DGDIDTLSKR
LAYIRTWTYV AQRKGWVEQD SHWRGETRAV EDRLSDALHT ALTQRFVDRR TSVLLRRLKQ
KESLVADVND KGEVTVEGEL IGRLEGFRFR QDKTATPEEA KTVRAAAVAA LAPEFHLRAD
RFYNAPETEI DYTEQGGLMW GEHAVGKLVK GADPLKPMVQ AFVDDEAGPE VAQKVERRLQ
HFIDRKIAAL FEPLMAMSRD EALTGLVRGF AFQLVEALGV LPRGTVANDV KSLDQDARAL
LRKHGVRFGQ FTIFLPLLLK PAPTRLRLVL SSLAKERDVF PESPPPGLVT IPTVEGVAQE
IYTESGYRAA GARAIRIDML ERLADMLRSV DTRGGFEATP DMLSITGMTL EQFADLMQGL
GYAAEKGERP KVKPAPVAAA PAEVAETPEG EPSDVPSETP NETPSETPPE APREMPVEVP
QEAPAEAPPE APTEDPVEAP TETPETPPAE IPDATAEPSE PGAAEAVSDV VAEKAEPEVE
VFYTFRWSPR PRRGEARGRR QGAESGGRPN AKTGGKPGGK PRGKGKPGGR PARETGPKTY
QSRPERKDKI DPDNPFAAAL MGLKDKS
|
|---|
| |