| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0548 |
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| Symbol | ugpA1 |
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| ID | 5712001 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 535489 |
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| End bp | 536355 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641266450 |
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| Product | ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpA |
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| Protein accession | YP_001531895 |
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| Protein GI | 159043101 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGGCC AAGTCCCCCG CAAAACTGTT TTTGCATTTA TCGGACCCGC TGTGATCGGC
TTGGCCTTGG TGGGGATTGC CCCGCTGCTC TACGCCCTCT GGACATCGCT ACACTTCTAC
AACCTGACCA AGCTGCGGCG GGTCGAGTTC ATCGGTCTGG AGAACTATTG GACGGTCCTG
ACGGATGAGG TGTTCTGGCA GGCGATGGGG CGCACGTTCT TTTTGCTCGG GACGGCCCTT
CCGTTGCAGA TCGCACTCGG GCTTGGCATC GCGCTGGTTC TCCATCAACC CGGTCTGACC
CTGGTCAAAA CGCTGGCGCG GCTCAGCCTG GTTCTGCCGA TGGCGACGAC CTATGCAGTG
GTCGGGCTTT TGGGGCAAGT GATGTTCAAC CAGAAATTCG GAGTCGTCAA CCAACTTCTG
GGCGGCGCCG ACATCAACTG GATTGGCGAT CCGGAAAACG CCTTTGCAAT GATCATCTTC
TGGGATGTCT GGCAGTGGAC CCCCTTTGTG GCGCTCGTTC TGCTCGCAGG TCTGACCATG
GTCCCGGGCG AGGTCGAAGA GGCTGCGCGC CTAGAGACAA AATCCAAATG GACGGTGTTG
CGCTACGTGC AGCTGCCCTT CTTGCTGCCA GGACTTGTTG CTGTGCTGAT CCTGCGCACC
GCGGATACCT TGAAACTGTT CGACATGGTT TTCACGCTCA CGCGCGGAGG GCCCGGGTCC
TCAACCGAGT TCATATCGCT GATGATCCAG CGTGTCGGCT TTCGCGGTTT TGATCAGGGC
CTCGCTTCGG CACAGGCGAT CATCCTGCTG ATCATCACTA TCGTGCTGGC GCAAATCTAC
ATCCGCGTCT TCTACAAGGA GGTTTGA
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| Protein sequence | MSGQVPRKTV FAFIGPAVIG LALVGIAPLL YALWTSLHFY NLTKLRRVEF IGLENYWTVL
TDEVFWQAMG RTFFLLGTAL PLQIALGLGI ALVLHQPGLT LVKTLARLSL VLPMATTYAV
VGLLGQVMFN QKFGVVNQLL GGADINWIGD PENAFAMIIF WDVWQWTPFV ALVLLAGLTM
VPGEVEEAAR LETKSKWTVL RYVQLPFLLP GLVAVLILRT ADTLKLFDMV FTLTRGGPGS
STEFISLMIQ RVGFRGFDQG LASAQAIILL IITIVLAQIY IRVFYKEV
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