| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0535 |
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| Symbol | pdhB1 |
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| ID | 5711988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 519929 |
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| End bp | 520912 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641266437 |
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| Product | pyruvate dehydrogenase E1 component subunit beta |
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| Protein accession | YP_001531882 |
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| Protein GI | 159043088 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.289294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGTGC AGCAGACAAC CTATCGCGAC GCTCTGCGCC TCGCGTTGTC CGAAGCCATG
ACCAAAGACG AAAACGTCAT CGTCATGGGC GAGGAGGTCG GGCGCTACGG TGGGGCCTAT
GGGGTGACCA AGGACCTGAT CAAGGAGTTC GGGCCGGAGC GGGTGATCGA TACGCCCATC
TCCGAGGCAG CCATCGTCGG TGCGGCCGTG GGGGCTGCGA TGACTGGTCT GCGCCCGGTC
GCCGAACTGA TGTATGTGGA TTTCATCGGC ATGACGATGG ATCAGCTTGC CAATCAGGCG
GCCAAGATCC GCTACATGTT CGGCGGACAG ATCGGTGTCC CGATGGTGCT GCGGACCCAG
GGCGGCACGG GGCGATCTGC AGGCGCACAG CATAGTCAAA GCCTCGAAGG GTATATCATG
CACACGCCGG GCCTTCGGCT TGCCATGCCT GCCACGGTCG AGGACGCGTA TCACCTGCTG
CGCCAGTCGT TGCAGCAGCC CGACCCCGTT GTCTTCATCG AACACAAGGG TCTCTACACC
ATGAAGGGCG CCCTCGACCC CGATGCCGCG CCTGCCGGCT GGGGCGAGGC GACGGTTCTG
CGCGAGGGCG ACGATCTGGT CATCGTCACC TATTCGCGGC AGGTGCACCA TGCCTTGGAG
GCTGCCGAAA CCTTGGCCGG TGCCCATGGC ATCAATGTCA CGGTTGTCGA TCTGCGCACA
CTCAACCCGC TTGATTTCGA CACGATCCGC CCCCTCGTTG AAGCCGCCGG GCGCGCAATG
GTGGTTTCCG AAGGGGTGAT GACCTGTGGG GTGGCGGCCG AACTGTCGGC GCGGATCACG
GAGGAATGCT TCGATTTCCT CGAAGAACCC GTGGTGCGCG TTGCGGGGGA GGATATTCCG
ATCTCGGTGT CACCGCTGCT GGAGCAGAAT TCGGTGCCAA CGCCGGAGTT GATCGTGGAC
ATTGCGCGGA AGATGTTCGC ATGA
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| Protein sequence | MAVQQTTYRD ALRLALSEAM TKDENVIVMG EEVGRYGGAY GVTKDLIKEF GPERVIDTPI
SEAAIVGAAV GAAMTGLRPV AELMYVDFIG MTMDQLANQA AKIRYMFGGQ IGVPMVLRTQ
GGTGRSAGAQ HSQSLEGYIM HTPGLRLAMP ATVEDAYHLL RQSLQQPDPV VFIEHKGLYT
MKGALDPDAA PAGWGEATVL REGDDLVIVT YSRQVHHALE AAETLAGAHG INVTVVDLRT
LNPLDFDTIR PLVEAAGRAM VVSEGVMTCG VAAELSARIT EECFDFLEEP VVRVAGEDIP
ISVSPLLEQN SVPTPELIVD IARKMFA
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