Gene Dshi_0436 details

Gene Information

• Locus tag: Dshi_0436
• Symbol: atpC2
• ID: 5711352
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dinoroseobacter shibae DFL 12
• Kingdom: Bacteria
• Replicon accession: NC_009952
• Strand: +
• Start bp: 428502
• End bp: 428912
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 641266340
• Product: ATP synthase F1, epsilon subunit
• Protein accession: YP_001531785
• Protein GI: 159042991
• COG category: [C] Energy production and conversion
• COG ID: [COG0355] F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)
• TIGRFAM ID: [TIGR01216] ATP synthase, F1 epsilon subunit (delta in mitochondria); [TIGR03166] alternate F1F0 ATPase, F1 subunit epsilon

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.189637
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 50
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACCATGG CGACCGAGAT GCGTGTCTAT CTGCGCCTGC CCTCGAGGAT CATGTTCGAC 
GGATCGGCGG TGCGGCTGCG TGGCGAGGCC CCGAATGGTA GTTTCGGCAT CCTGCCCAAC 
CATGTCGACC TGGTCACGCC GCTGGTGTCT TCGGTGCTTC TGATCGCGCA GGCCGACGGG 
ACGGAGCGGA TTTTCGGGAT CGACGAGGGG CTGTTGGTCA AGAAGGGTCA CCGGGTCGAG 
GTGGCGGTGC GCCGGGCGGT GGAGACCGAC GACCTGGACC AGATGCGCGA CATCGTGCGC 
GACAGTTTCG CGGGTCTCGA AGACGAGGAG CGCGCCGCGC GCGCCGCCCT GTCGCGGCTG 
GAGGCCGATA TGGTGCGGCG GTTTGCAAGC CTGAGAAAGG CGCAGGGATG A 

 

Protein sequence

MTMATEMRVY LRLPSRIMFD GSAVRLRGEA PNGSFGILPN HVDLVTPLVS SVLLIAQADG 
TERIFGIDEG LLVKKGHRVE VAVRRAVETD DLDQMRDIVR DSFAGLEDEE RAARAALSRL 
EADMVRRFAS LRKAQG