| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_0102 |
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| Symbol | dnaE1 |
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| ID | 5711725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009952 |
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| Strand | + |
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| Start bp | 99840 |
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| End bp | 102824 |
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| Gene Length | 2985 bp |
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| Protein Length | 994 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641265997 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_001531452 |
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| Protein GI | 159042658 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGTCG AACTCTGCGC CTTGTCCAAT TTCACCTTTC TGACCGGCGC CTCCCATCCC
GAAGACTATG CGCAGAAGGC CGCCCTTCTG GGCCTACCCG CCTTTGCCAT CGCCGATGTG
AATTCCGTGG CCGGAATTGT GCGGGCCCAT ACGGAACTGA AGGAAATCGC CCGGCAAATC
GACTTGTGCG CGACGGCCGA GGCGCGGGAT GGTCCCATCG GGCCGCCCTG GCCCGGCCCG
CGATCCGAGG ATAGCGCCGC GGTTCGCAAC CTGCCGCGGC TTCTGCCTGC GGCTCGATTG
CGCTTGCGCG AGGGGACCGA GATCACCGCC CTGCCCGAGG ATCGCGCAGC CTGGGGTCGG
CTCAGCCGGC TCTTGACCCT CGGCCAACGT CGCGCGCCCA AGGGGCGCTG CCATCTCGAC
CTGGCGGATG TGCTGGATGA GGCGGATGGG ATGCAATTGC TCCTCCACGG GCTGCCAGAG
GCACCGCCGG TGCAGCTCGG CGCGGGCCGA ACATGGCCAC AGGCGGAGGC GTTGACGCGC
CGCTTTCCCG GCAAGGTCAG CCTGCTGATG ACCCCGGCTT ATGACGGCCA GGACCGCGTG
CGTTTCGATC GGTGGGCGGC GCTGGCCGAC ACCTTGGGCC TGCCCACGGT CGCTTCCGCG
GCGCCGCTCT TTCATTGCGC GACCCATCGA CGCCTTGCGG ATGTGTTGAC CGCCATTCGC
AATGGCTGCC GTGTCGAGGA CCTTGGTCGC ACCGCGCAGG CCCATGCAGA ACAGCGTCTG
CGTTCCGAGG CCGAGATGCT GCGCCTGTTT CGCGGGCACG AGGACGCGGT GCACCGGACC
GCCGAGATCG CCGCGCGCTG CAGCTTCTGC CTCAGCCAGT TGCGCTATGA ATATCCTTCC
GAAACCCGCG GCGGCGAGAC CGCCCAGGAC CGCCTTTCCC GATTGGCCCA TGAAGGCTTG
CGCTGGCGCT ACCGCAACGG CGCGCCGCCC AAGGTCCGGA AGATGCTCGA CCATGAGCTG
CGCCTGATCG GCAAGCTCGG CTATGCGCCC TATTTCCTGA CGGTCAACGA CATCGTCGCC
TTCGCCCGCT CGCGCGATAT CCTTTGCCAG GGGCGCGGCT CGGCGGCCAA TTCGGTGGTC
TGCTACTGCC TCGGCATCAC GTCGGTCTCG CCCGAGGTCG GCACCATGGT GTTCGAGCGC
TTCGTCTCCG AGGCCCGCGA CGAGCCACCG GATATCGACG TGGATTTCGA GCATGAGCGC
CGCGAGGAGG TGATCCAGCA TATCTATGAA CGCTACGGTC GTCACCGCGC CGGGCTTTGT
GCCACGGTGA TCCATTACCG GGGCAAGCGA GCGGTGCGCG AGGTGGGTCG CGCCATGGGG
CTGAGCAGCG ACACGCTCTC GGCGCTCAGC TCGCAGATCT GGGGCTTCGG GTCCGTGCGC
GGCATCGAAG AGACGCGCTT GCGCGAGATC GGGCTCGACC CCACGGATCG CCGTCTGCGC
CAGACCATCG ACCTGATTTA CCGAATCCAG GGCTTCCCGC GGCATCTCAG CCAGCATGTG
GGTGGTTTCA TCATTACCGA AGGCCGGCTC GACGAGCTGG TGCCGGTGGA GAACGCCACC
ATGGTGGACC GCACGGTGGT GTGCTGGGAC AAGGACGATC TCGACAGTCT TGGCATCCTG
AAAATCGATA TCCTCGCGCT CGGCATGCTG TCTTGCGTGC GCAAGGCATT CGACCTGATC
GCCCATCATC ACGGGGCCAA ATTCAGCCTT GCCACCCTGC CGGTCGAGGA TCCTGCGGTC
TACGACATGC TCTGCCGGGC GGACAGCATC GGTGTTTTCC AGGTGGAAAG CCGGGCCCAG
ATGAACTTCC TGCCGCGGAT GCGCCCGCGC TGCTTCTACG ACCTGGTGAT CCAGGTCGCC
ATTGTTCGCC CGGGGCCGAT CCAGGGGGAC ATGGTTCATC CCTTCATCCG CCGCCGCAAC
GGCGAGGAGC AGGTGGAATT TCCCTCCGAC GCCTTGGGCG AGGTGCTGAG CAAGACCCTC
GGCGTGCCGC TCTTCCAGGA GCAGGCAATG CAGATCGCCA TCGTCGGTGC GGGGTTCGAC
CCGTCCGAGG CCGACCGCCT GCGCCGGGCG CTGGCCACCT TCAAGAAACA CGGAAACGTA
TCGGAATTTC GCACCCGGTT TCTCAAGGGC ATGGCGCAAA ACGGTTATGA CACGGCGTTT
GCGGAGCGGT GCTTTTCCCA GATCGAGGGT TTCGGCAGCT ATGGTTTTCC CGAAAGCCAT
GCGGCGAGCT TCGCGCTGCT GGTTTATGCC TCGGCCTGGA TCAAGTGCCA CCACCCGGGC
ATCTTCGCCT GTGCACTGCT GAACGCGCAG CCCATGGGGT TCTATGCGCC CGCGCAGATC
ATGCGCGACG CCCGTGAGCA TGGCGTGACC GTGCGCCCGG TCTGCGTCAA TGCAAGCTTC
TGGGACAACA CGATGGAGCC GGACGGGCAA GGCGGGCTGG CCCTGCGCCT CGGCTTTCGC
CAGGTAAAGG GGCTGGCGCA GGAGGATGCC GAGTGGCTCG TCAGCGCGCG CGGCAATGGC
TACGGCACGG TGGCGGACCT GTGGCGCCGG GCGGGGTTGG GCCAGGCCGT ACTGACCCGC
TTGGCCGAGG CGGATGCCTT CGCCGAACTG GGGCTTGGCC GCCGCGACGC GCTCTGGCAG
GCACGCGCGA TCCGGGGGGA CGCACCTCTG CCGTTGTTTT CCGGCGACAT GGACGGAGAG
GGCGGGGCCG AGCCGCCCGT GGTGTTGCCG CCGATGAGCC TGGGCGAAGA GGTGGTGGAG
GATTTCGTGG CCATGCGCCT GAGCCTGCGG GCCCATCCCG TGGCCCTGCT CCGGCATGTT
CTGACCCCGG GCATGGGCGA TCCGGAGCTT GCCGGTCGAG TGCAGGGGCC GCGTGGTGCA
GGGCGGAGCG AGGGGCCAGC CCCTCGCGCT CCCCGGGATA TTTGA
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| Protein sequence | MFVELCALSN FTFLTGASHP EDYAQKAALL GLPAFAIADV NSVAGIVRAH TELKEIARQI
DLCATAEARD GPIGPPWPGP RSEDSAAVRN LPRLLPAARL RLREGTEITA LPEDRAAWGR
LSRLLTLGQR RAPKGRCHLD LADVLDEADG MQLLLHGLPE APPVQLGAGR TWPQAEALTR
RFPGKVSLLM TPAYDGQDRV RFDRWAALAD TLGLPTVASA APLFHCATHR RLADVLTAIR
NGCRVEDLGR TAQAHAEQRL RSEAEMLRLF RGHEDAVHRT AEIAARCSFC LSQLRYEYPS
ETRGGETAQD RLSRLAHEGL RWRYRNGAPP KVRKMLDHEL RLIGKLGYAP YFLTVNDIVA
FARSRDILCQ GRGSAANSVV CYCLGITSVS PEVGTMVFER FVSEARDEPP DIDVDFEHER
REEVIQHIYE RYGRHRAGLC ATVIHYRGKR AVREVGRAMG LSSDTLSALS SQIWGFGSVR
GIEETRLREI GLDPTDRRLR QTIDLIYRIQ GFPRHLSQHV GGFIITEGRL DELVPVENAT
MVDRTVVCWD KDDLDSLGIL KIDILALGML SCVRKAFDLI AHHHGAKFSL ATLPVEDPAV
YDMLCRADSI GVFQVESRAQ MNFLPRMRPR CFYDLVIQVA IVRPGPIQGD MVHPFIRRRN
GEEQVEFPSD ALGEVLSKTL GVPLFQEQAM QIAIVGAGFD PSEADRLRRA LATFKKHGNV
SEFRTRFLKG MAQNGYDTAF AERCFSQIEG FGSYGFPESH AASFALLVYA SAWIKCHHPG
IFACALLNAQ PMGFYAPAQI MRDAREHGVT VRPVCVNASF WDNTMEPDGQ GGLALRLGFR
QVKGLAQEDA EWLVSARGNG YGTVADLWRR AGLGQAVLTR LAEADAFAEL GLGRRDALWQ
ARAIRGDAPL PLFSGDMDGE GGAEPPVVLP PMSLGEEVVE DFVAMRLSLR AHPVALLRHV
LTPGMGDPEL AGRVQGPRGA GRSEGPAPRA PRDI
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