| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2157 |
|---|
| Symbol | |
|---|
| ID | 8420008 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2452755 |
|---|
| End bp | 2453411 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 645038751 |
|---|
| Product | HhH-GPD family protein |
|---|
| Protein accession | YP_003199019 |
|---|
| Protein GI | 258406277 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2231] Uncharacterized protein related to Endonuclease III |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.242107 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCAC GACAGACCTA CCTGCTCAAT ATGCACGCCG CCATGCTGGA TGCATTGGGA
CCCAGTCATT GGTGGCCCGG GGAAACCCCG TTTGAAATCG TGCTTGGGGC CATTTTGACC
CAAAACACGA ATTGGGAAAA TGTCCGCCGT GCACTCAACG CACTCCGGGC CCAAAATCTC
CTGTCAGCTC CGGCTCTGGC GGCTCTGGAC ACGGAAGAAC TCGCCGCCTT GATCAGGCCG
GCGGGCTATT ATCGGGTCAA AGCCGGACGC ATCAAGAACT TTCTCCGTTT CTTCGAACAC
GAAGCCGGGT TCGATTTTAC AGTCCTGCAA GCCTTGCCGA CACCGGAAAT TCGGGAAAGA
CTGCTCGGCG TCAACGGAAT CGGTCCGGAA ACGGCCGACA GCATTGCCCT GTACGCTTTG
GACAAACCGA CATTCGTCGT TGATACGTAC ACGGCCCGTA TTTTCGGCCG GCACGGTCAA
ATCCCTGAAG AGATTTCCTA CGCCGACCTC CAGGCCTACT TTACTGAGGC CCTGCCCGAG
GACACCGCCC TTTTCAATGA ATTCCACGCC CAGATCGTGC GTGTCGGCAA ACACTGGTGC
AAGAAGAAAC AGCCGCAATG CCACAGATGC CCACTGGAAC CGTTTCTTCC CCTCTGA
|
|---|
| Protein sequence | MQSRQTYLLN MHAAMLDALG PSHWWPGETP FEIVLGAILT QNTNWENVRR ALNALRAQNL
LSAPALAALD TEELAALIRP AGYYRVKAGR IKNFLRFFEH EAGFDFTVLQ ALPTPEIRER
LLGVNGIGPE TADSIALYAL DKPTFVVDTY TARIFGRHGQ IPEEISYADL QAYFTEALPE
DTALFNEFHA QIVRVGKHWC KKKQPQCHRC PLEPFLPL
|
|---|
| |