Gene Dret_1995 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_1995 
Symbol 
ID8419840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp2291774 
End bp2293423 
Gene Length1650 bp 
Protein Length549 aa 
Translation table11 
GC content50% 
IMG OID645038583 
ProductPeptidoglycan-binding lysin domain protein 
Protein accessionYP_003198857 
Protein GI258406115 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3267] Type II secretory pathway, component ExeA (predicted ATPase) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTACT ACAAGCTACT GAACCTCACC CGGGAACCAT TTTCTAATTC TCCGGACCCA 
GACCTATTTT TTCGCTCTTC CAAACATGCG GACTGCCTGC ACAATATTGA AATAGCTCTC
CGACTACACA GAGGACTTTG CGTTGTCTGT GGAGAGGTAG GCACTGGCAA GACTACGATT
TGCAGGCACC TGCTCCAGTC CACAGTCGAC GATGACTCCC TGGAAATGCA CCTGATCCTG
GATCCTTCCT TTAACGATGA ACTGGAAATG TTGAGCACCA TCAACTCTAT GTTCAATGGT
CCAGGTGAGG CCGGTCAATG CCAGAACGCC GGGCAGCATA AGGAGATGAT CAAGGATTAT
CTCTTCCTAC AGGGAGTCGA CAGGCAAAAG ACGATTGCGC TTTTGCTTGA CGAAGGGCAG
AAGCTGACCA GCACCGGGGC TGAAATTTTG CGCGAGCTGT TAAACTTCGA AACGAATTCG
CAAAAGCTTG TACAGATCCT CATTTTTGCC CAACGGGAGA TCGACCAGCT CCTGGAGCAA
ATGCCCAATT TCGCTGACCG GATCAGCCTG TATCACCAGC TGTTGCCTTT GAGCCGCAAA
GACACGGATT TGTTCATCCG CTACCGCCTG GACCGGTCCT GCGCAAGCGA CCCAGAGCAA
AAAAAAGTCG TCTTTACTCG CCGGGCCCTG CGTCTCGTGC ACACCATGAC TGGGGGATAT
CCCCGCAAGA TCATAAACCT GGGCCACAAT ATCCTTTTGA CCCTTATCAT CAAAGGTACG
CACAAGGTCA CTCCTGCAGT GGTCCGCCAT GCTGCCCGCA ACCTCCAAGC CCTGCATTGC
CCTTTGCCCT GGACACGACT GTTCTGGTGC GCAGGGGGTA TGGTTATACT GGCTCTCTTG
TGGACTTTTA ACGCTATATA TACCAACTCT GCATTTATGG ACCCCACTGT CTTTGAAAGC
CTGAATCGAT CAACATCAGA GCAATCACTC TCCTCGACAC CGCCCCCGGA CCAAGAACAC
AATTCACAAC CTGCTGTCCT CCAGCCGATC CAAAAAAAAA TACATACGTC ACCACTAGCA
AAGAGGAGCC CCGAAGGTGC CCATGCCCAG GGCGAACCTC AGAATCTGCC ACCTACAGAG
TTTACACCTA CTCCATCCCC CATAGATGAT CAAAACCCCA GTCTTCCTCA ACTCCTTGGT
TCCGTCCATG TCAACAGAAA TGAAAATTTG TGGAATATAG CCCAGGGGAT ATATGGCACC
AGCAGCGAGG ATCTTTTACA GGAACTCATC CAGGCGAATC CGGAAATTGA AAACCCTGAC
ATCATTCACC AGGGTCAACA GATACATATC CCCGCAACAG GATTTGAGCC TGCGAAGGAA
AATCAACAAT ATTGGATTGT CACTTCTACC CATACAAAAC TTGATGAAGC CTATGATGCC
ATGTTGGATG GCCCGGATCG ACTCCGCGTT CTCTGCACCT GGGATTCCAA AAATGGCCTT
CAATACCATG TAGTAGTCAA GACGCCCTTT CGGCAGTCGA AACAAGCAAA AAAAACTATG
CAAGATGTCG AATACAATAT TTTTGCAGGT GCCCAGGTAC TGGATGCAAA TAATATGTAC
ATTGGCAATA TTGCGCAAGA CATAGAATAG
 
Protein sequence
MDYYKLLNLT REPFSNSPDP DLFFRSSKHA DCLHNIEIAL RLHRGLCVVC GEVGTGKTTI 
CRHLLQSTVD DDSLEMHLIL DPSFNDELEM LSTINSMFNG PGEAGQCQNA GQHKEMIKDY
LFLQGVDRQK TIALLLDEGQ KLTSTGAEIL RELLNFETNS QKLVQILIFA QREIDQLLEQ
MPNFADRISL YHQLLPLSRK DTDLFIRYRL DRSCASDPEQ KKVVFTRRAL RLVHTMTGGY
PRKIINLGHN ILLTLIIKGT HKVTPAVVRH AARNLQALHC PLPWTRLFWC AGGMVILALL
WTFNAIYTNS AFMDPTVFES LNRSTSEQSL SSTPPPDQEH NSQPAVLQPI QKKIHTSPLA
KRSPEGAHAQ GEPQNLPPTE FTPTPSPIDD QNPSLPQLLG SVHVNRNENL WNIAQGIYGT
SSEDLLQELI QANPEIENPD IIHQGQQIHI PATGFEPAKE NQQYWIVTST HTKLDEAYDA
MLDGPDRLRV LCTWDSKNGL QYHVVVKTPF RQSKQAKKTM QDVEYNIFAG AQVLDANNMY
IGNIAQDIE