| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1916 |
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| Symbol | |
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| ID | 8419759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | - |
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| Start bp | 2198030 |
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| End bp | 2199211 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645038502 |
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| Product | twitching motility protein |
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| Protein accession | YP_003198778 |
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| Protein GI | 258406036 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.368763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAGGG CCCAACTCGA CACGATCATT TCCCAAGCCA TCGCCTATGC CCCTGACACG
TCGGATATCC TCTTCACCGT GGGCAAGCCG CCGCAGGCCG AAGTCTACGG CTCGCTGACG
GATATCCCCT TGCGGCCCAG CCTGGGTCCG CTTTTGCCCT TTCAGGTCGA GGAGATCGCG
ACCTGCATGA TCGGGGACAA TCTGCGGTTG TACACCGATC TGGTGCGCAC CGGCTCCTGC
GATTTGGCCT ACGCCATCCG CGGCCAAGGG CGGTTCAGGG TCAATATTTT CCATCAGCAG
GGCAATCTGG CCGTGGTCAT GCGCAGGCTG CCCCACGACG TCCCGACCAT CCAGGAAATG
GGATTGCCGG AAATCTTTTA CGAAGTCGCC CAGGAAAAAT ACGGCCTGGT GCTGGTCACC
GGGGCCACAG GCACCGGAAA AACAACCTCT CTGGCAGCGC TGGTCAACGA GATCAACGCC
ACCATGCCGG GGCATATCCT GACCCTTGAA GATCCGGTGG AATATGTCCA TCCCCACCAG
CGCGGCACCG TCAATCAACG GGAACTCGGG GTGGACTTCG CGACCTTTGC CTCCGGGTTG
CGGGCGGCGC TGCGTCAGGC GCCCAAAGTC ATCCTGGTCG GGGAAATACG GGACCGGGAG
ACCGTGGGCA TTGCCATGGA TGCGGCCGAG ACGGGCCACC TGGTCCTGGG GACCCTGCAC
ACCAGCGACA CCGGGCAGAC CATCAATCGT ATGATCGGTA TGTTTGAACT CAGCGAGGAA
CGTCTGGTCC GGGGACGGCT GGCCGAGAGT CTGAAATTCG TCATCTCCCA GCGTTTGATG
CCCCGCCAGG ACGGGCGGGG CCGGGTGGCG GCTTTCGAAG TGCTGCGCCG CAGCCTGCGT
ATCCGCGATC TGATCATCAA CGGGGAAGAT GAGGAGCGCA CCTTTGCTTC CGTGGTCGGC
AGCAGTGAGG CGGTGGGGAT GTTCAGCTTC GAGAAGTCGT TGCTAGATCT CTACCGCCGG
GGCCTCATTT CCGAGGATGT CGCTTTGCTG CACGCCTCGG ACAAATCGAG GCTGAAAAAA
CTCATCGACC GGATCAAATC AGAGCGGGGC GAGCGAGTCA CGGACATCGA TGGTCTCGAG
CTGGACCTGG ATTACGAGCA AAACGTGTTG AACGGCCCCT GA
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| Protein sequence | MLRAQLDTII SQAIAYAPDT SDILFTVGKP PQAEVYGSLT DIPLRPSLGP LLPFQVEEIA
TCMIGDNLRL YTDLVRTGSC DLAYAIRGQG RFRVNIFHQQ GNLAVVMRRL PHDVPTIQEM
GLPEIFYEVA QEKYGLVLVT GATGTGKTTS LAALVNEINA TMPGHILTLE DPVEYVHPHQ
RGTVNQRELG VDFATFASGL RAALRQAPKV ILVGEIRDRE TVGIAMDAAE TGHLVLGTLH
TSDTGQTINR MIGMFELSEE RLVRGRLAES LKFVISQRLM PRQDGRGRVA AFEVLRRSLR
IRDLIINGED EERTFASVVG SSEAVGMFSF EKSLLDLYRR GLISEDVALL HASDKSRLKK
LIDRIKSERG ERVTDIDGLE LDLDYEQNVL NGP
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