| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_1877 |
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| Symbol | |
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| ID | 8419720 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 2151124 |
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| End bp | 2153637 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 645038463 |
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| Product | heavy metal translocating P-type ATPase |
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| Protein accession | YP_003198739 |
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| Protein GI | 258405997 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG2217] Cation transport ATPase |
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| TIGRFAM ID | [TIGR00003] copper ion binding protein
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000289142 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00605245 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGCCT CCACTTCCAC CCCTCACAAG GGCACTTTTT CCATAACCGG CATGACTTGT
GCGGCGTGTT CCTCCCGTAT TGAGCGGACC GTGAACAAAA TGGAAGGCGT CCAAGAAGCG
TCGGTCAACC TGGCGGCGGA AACCATGCAG GTGAGTTGGG ACCCGGTGAT CGTCTCCGCC
GAGGACATCG TCCAGGCCGT GAAAGACGCG GGGTTCAACG CCCAGCCGCC CTCCAGCCAC
CAGCAACTCC AACTCGGCAT CCGGGGCATG ACCTGCGCCG CCTGTTCGGC GCGGGTCGAA
AAGGCCCTGG GCAAGCTGCC CGGCGTCGAC CAGGCCCAGG TCAATCTGGC CGCAGAAACC
GCCAGCGTGA CTCTGGACCC GAACAAACTC CGCTTTGCCG ATCTGCAAAA AGCCGTGGCC
GACGCCGGTT ACGAAGCTGT GGCAATGGAG GACAGCGACT CCGCCGAAGA CCAGCGCCAG
CAAGAGCTTC TCGACCGCCT GCACACCATG CGCCAACGGT TGTGGGTCGC CGTCGCCTTC
ACCATTCCCC TGCTTATCGT GTCGATGGGC GAAATGCTCG GTCTGCCCCT GCCCGTGTGG
CTCAGCCCCC AGCACGCCCC GCTCAATTTT GCCCTGACCC AGTTCGTGCT CACGGTGCCC
GTCCTCTGGG CCGGCCGGGA TTTCTACCTC CACGGTTTTC CCAATCTGTA CCGGCTGGCA
CCGAACATGG ACTCGCTCAT CGCGGTGGGG ACCAGCGCCG CCTTTGTCTA CTCCACGTGG
AATCTTTTGG AGATCATGAT CGGCAACAGT CCGGTCAGCC GGGCTATGGA TCTCTATTTT
GAATCCGCCG CCGTCATTTT GACCCTGGTT TCGCTGGGGA AATATCTCGA AAACCGTTCC
AAGGCGCGGA CTTCGGACGC CATCAAGGAA CTCATGCAGC TGCGGCCTGA GACCGCCACT
CTGGTCCGCG GCGAGGAACT GGTCAGCGTC CCCATCCAGG ATGTCCGGCC CGGCGACACC
CTGCTCGTGC GCCCCGGGGA ACGGATCCCT GTGGACGGCA CGGTGGTCGA GGGGCACTCC
AGCGTCGACG AATCCATGCT CACCGGCGAG AGTCTCCCGG TCGGCAAACG GATCGGCGAC
GCTCTGGTGG GCGGCACCTA CAACGCCCAC GGCTCCCTGC GCATGCAGGC CGACAAGGTC
GGCAAGGATA CAACCCTGTC CCGGATCATC CAGCTGGTTC AGGAAGCCCA GGGTTCCAAG
GCCCCCATCG CCAGCCTGGC GGACACGGTC AGTCTCTATT TCGTGCCCAC AGTCATGGCC
ATCGCCCTGA CCGCCGGCCT GGCCTGGTTT TTTGTGGGCC AGACCGAATT CACCTTTGCC
CTGCGCATCT TCATCGCCGT CATGGTCATC GCCTGCCCTT GCGCCCTCGG ATTGGCTACG
CCGACAGCAA TCATGGTTGG CACCGGACGC GGCGCTCAAC TCGGCGTGCT CATCAAAAGC
GGCGCGGCAT TGGAAATGGC CCGCAAAGTC GGCGCTGTTG TCTTTGACAA GACCGGGACC
CTGACTTTCG GACGCCCCGA ATTGGTGCAC ACCGATTATA TGGAGCAGGA CGGGTTGGAC
CAGACGACCA TCGCTCGTCT GGTGGCCGGG GTGGAACAGG AGTCCGAGCA CCCCCTGGCC
CAGGCCCTGG TCCGAGGGCT GAGCCAGGAA GAGGCCATTT TGCCCCGCCC GGATTCCTTT
GAAGCCGTGC CGGGCAAAGG TATCCGGTCC CGGATCGCAG AACATGATGT GCTCATCGGG
AATGCGGCCT TCCTCAGAGA CGAAGGCATC GCGGGCATCG ATGACCCGTC CAGCCAGGAG
ACCATCCGCC AGCAATCCGA TCAGGGCGCC ACACCGATCG CCATTGCCGT GGACGGGCGA
GCAGCGGCCA TTTTTGGCGT TGCCGACACC GTCAAGGACG AGGCCAGTGA AGTCGTCCAC
CGTCTGAACG ATCTCGGCCT CAAAGTGATC ATGCTCACTG GAGACAACAG CCGCACGGCC
CGTGCCATCG CCGAGCGCAT CGGGATCGAC GACGTCGTGG CCGAGGTTCT GCCGGAAAAC
AAGGCCGCCG CCATCCAGGA TCTGCAACAG CAAGGGCACA AAGTGGCCAT GATCGGCGAC
GGAATCAACG ACGCCCCGGC CCTGGCCGCA GCCGATCTCG GCATCTCCAT GGGTACCGGC
ATTGATGTGG CCATTGAATC CGGTGATGTC GTGCTCATGC AGGGGCGCCT GACCGGCGTA
CTCGACGCCC TGGAGCTGAG CCGGGCCACG GTGCGCAATA TCAAGCAGAA TCTTTTCTGG
GCATTTTTCT ACAATATTCT GGGGATCCCG GTCGCAGCCG GCCTGCTGTA CGCCTTTGGC
GGCCCGACTT TGAACCCCAT GATCGCTGGG GCGGCGATGG CCATGAGTTC GGTCTCCGTG
GTCACCAACG CCCTGCGACT CCGATTTTTC CAGCCCTCGT ATGCCATGCG CTAA
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| Protein sequence | MDASTSTPHK GTFSITGMTC AACSSRIERT VNKMEGVQEA SVNLAAETMQ VSWDPVIVSA
EDIVQAVKDA GFNAQPPSSH QQLQLGIRGM TCAACSARVE KALGKLPGVD QAQVNLAAET
ASVTLDPNKL RFADLQKAVA DAGYEAVAME DSDSAEDQRQ QELLDRLHTM RQRLWVAVAF
TIPLLIVSMG EMLGLPLPVW LSPQHAPLNF ALTQFVLTVP VLWAGRDFYL HGFPNLYRLA
PNMDSLIAVG TSAAFVYSTW NLLEIMIGNS PVSRAMDLYF ESAAVILTLV SLGKYLENRS
KARTSDAIKE LMQLRPETAT LVRGEELVSV PIQDVRPGDT LLVRPGERIP VDGTVVEGHS
SVDESMLTGE SLPVGKRIGD ALVGGTYNAH GSLRMQADKV GKDTTLSRII QLVQEAQGSK
APIASLADTV SLYFVPTVMA IALTAGLAWF FVGQTEFTFA LRIFIAVMVI ACPCALGLAT
PTAIMVGTGR GAQLGVLIKS GAALEMARKV GAVVFDKTGT LTFGRPELVH TDYMEQDGLD
QTTIARLVAG VEQESEHPLA QALVRGLSQE EAILPRPDSF EAVPGKGIRS RIAEHDVLIG
NAAFLRDEGI AGIDDPSSQE TIRQQSDQGA TPIAIAVDGR AAAIFGVADT VKDEASEVVH
RLNDLGLKVI MLTGDNSRTA RAIAERIGID DVVAEVLPEN KAAAIQDLQQ QGHKVAMIGD
GINDAPALAA ADLGISMGTG IDVAIESGDV VLMQGRLTGV LDALELSRAT VRNIKQNLFW
AFFYNILGIP VAAGLLYAFG GPTLNPMIAG AAMAMSSVSV VTNALRLRFF QPSYAMR
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