Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dret_1778 |
Symbol | |
ID | 8419619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfohalobium retbaense DSM 5692 |
Kingdom | Bacteria |
Replicon accession | NC_013223 |
Strand | - |
Start bp | 2048528 |
End bp | 2049874 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 645038362 |
Product | Peptidase M23 |
Protein accession | YP_003198640 |
Protein GI | 258405898 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00000277073 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACGGC GAAAAGGACA AGGATCCTCA CGTAAAGGCA CGTTTCTCGT TTTTCTGCTT CTGCTTCTCC TGGCAGGCGG AGGAACGCTG TATTTCTTGA ATGCGGAAGG CACTCCCCCG CAAATCACCC TGACACCGCA AACCTCGTAT ATCGGGCAGG ATGCCCAACT CGAAGTCGCG TTGCAGGATC CGGACAGTGG GTTACGGCAG GTGACCGTCA CGGCTGTCCA GAATGGGACC CGGATTCAGG TCCTGCCCCC GACGGACATT CGAGGCGGAC AATGGCAGCA AGCCTTCTCT TTGAAGAATC TCGGGTTGCG CGAGGCCCCG TTCGAGTTGC AGGTCGTGGC CACGGATCGC TCCTGGCGCC GGCTGGGCAA GGGGAATATC GCCCAAGTGC AGCACCAATT TACCCTGGAC ACGACCATGC CCTCGGTCGG GGTGCAGTCT GTGCACCATA ACCTGAACCA GGGTGGCTCG GGGATGGTTA CCTTTTCGGC CAGCGAACCC CTCGCTCGGG CTGGGGTGCA GATCGGGGAG AGCTTTTTCC CGGCCTACCA GACCGAAAAC GACGACTGGA TCTGTCTGTT TGCCTTCCCC TATTTCGCCA CACCAGGAGA GGACCACCCC GTCCTTGTGG CTGAAGACCG GGCCGCGAAC AAATTCAGGA CCGGGTTTAC GTATCACGTC AATGCCCGCA ATTTCCCCCA GGACCGCATT CGGGTTTCCG ATGCCTTTTT GCAGGCCAAG ATGCCGCAAT TTCAGAATGA TTTTCCGGAG GCCGGGACCT TGCTTCAGGT TTTTCTGCAG GTCAACGGAC CCATGCGGGA TCAAAACCGG TCCTGGTTGC GGGAGGTCGG TCAAAAAACG GTGGCCAAAC GGTTGTGGGA GGGCAAGTTC CTGCGCCTGC CGAACGCCGC CCGCAGGGCA TCGTTCGGCG ACCAACGGAC GTATGTCCAT GGTGGAGAGG CCATCGACCG AGCGACCCAT CTGGGCGTGG ATCTGGCTTC AGTGGCGCGA GCCGAAGTCC CGGCCGCGAA TTCAGGTCGG GTGGTCTTCA GCGATTTTCT GGGAATCTAT GGCAATGTGG TGGTCATCGA TCACGGTTTC GGTTTGCAAA GCCTGTACGC CCACTTGAGC AAGAGTATGG TCCAGGAAGG TCAAGAGGTG ACCAAGGAGC AGATTATCGG CAAGACCGGC GCCACGGGGC TGGCCGGCGG CGACCACCTC CATTTTGCTA TGCTGGTCTC CGGGCAGCCG GTCAATCCGG TGGAATGGTG GGACACCAAC TGGATCGCGA ACAATATTCT CTCCAAGTGG GAATATCTGC AAGAAAACGC TTCGTAG
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Protein sequence | MARRKGQGSS RKGTFLVFLL LLLLAGGGTL YFLNAEGTPP QITLTPQTSY IGQDAQLEVA LQDPDSGLRQ VTVTAVQNGT RIQVLPPTDI RGGQWQQAFS LKNLGLREAP FELQVVATDR SWRRLGKGNI AQVQHQFTLD TTMPSVGVQS VHHNLNQGGS GMVTFSASEP LARAGVQIGE SFFPAYQTEN DDWICLFAFP YFATPGEDHP VLVAEDRAAN KFRTGFTYHV NARNFPQDRI RVSDAFLQAK MPQFQNDFPE AGTLLQVFLQ VNGPMRDQNR SWLREVGQKT VAKRLWEGKF LRLPNAARRA SFGDQRTYVH GGEAIDRATH LGVDLASVAR AEVPAANSGR VVFSDFLGIY GNVVVIDHGF GLQSLYAHLS KSMVQEGQEV TKEQIIGKTG ATGLAGGDHL HFAMLVSGQP VNPVEWWDTN WIANNILSKW EYLQENAS
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